View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4761_low_4 (Length: 370)

Name: NF4761_low_4
Description: NF4761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4761_low_4
NF4761_low_4
[»] chr4 (9 HSPs)
chr4 (7-360)||(4078739-4079091)
chr4 (188-342)||(47748323-47748477)
chr4 (73-189)||(12607278-12607394)
chr4 (269-345)||(50076768-50076844)
chr4 (118-186)||(21678750-21678818)
chr4 (281-345)||(50076066-50076130)
chr4 (30-130)||(12248486-12248587)
chr4 (137-177)||(14643486-14643526)
chr4 (79-131)||(56079024-56079076)
[»] chr3 (6 HSPs)
chr3 (188-345)||(41405923-41406080)
chr3 (259-345)||(7219452-7219538)
chr3 (80-165)||(3400093-3400178)
chr3 (79-152)||(22450129-22450202)
chr3 (185-244)||(7219393-7219452)
chr3 (79-180)||(40199892-40199993)
[»] chr8 (3 HSPs)
chr8 (185-345)||(8865134-8865294)
chr8 (183-342)||(25584507-25584666)
chr8 (92-137)||(15986358-15986403)
[»] chr5 (7 HSPs)
chr5 (30-186)||(16842471-16842627)
chr5 (79-180)||(18312008-18312109)
chr5 (120-189)||(24549987-24550056)
chr5 (91-189)||(24509948-24510046)
chr5 (290-342)||(5323885-5323937)
chr5 (191-343)||(34540900-34541052)
chr5 (33-129)||(41136058-41136156)
[»] chr6 (6 HSPs)
chr6 (201-342)||(10795403-10795543)
chr6 (191-321)||(20820731-20820860)
chr6 (10-189)||(13281106-13281286)
chr6 (33-186)||(30630887-30631040)
chr6 (189-345)||(15581691-15581848)
chr6 (117-179)||(3322604-3322666)
[»] scaffold0161 (1 HSPs)
scaffold0161 (26-189)||(5579-5741)
[»] chr7 (3 HSPs)
chr7 (79-137)||(9419182-9419240)
chr7 (117-189)||(17881836-17881908)
chr7 (117-162)||(6004358-6004405)
[»] chr2 (2 HSPs)
chr2 (79-189)||(35655896-35656006)
chr2 (226-343)||(5292116-5292233)
[»] chr1 (1 HSPs)
chr1 (90-181)||(9375692-9375782)
[»] scaffold0005 (1 HSPs)
scaffold0005 (137-177)||(173766-173806)


Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 360
Target Start/End: Complemental strand, 4079091 - 4078739
Alignment:
Q  7 tgcagcacaataacaacaaacagaaataaagtaaagtgcgataaaaaatagcataagagattttgcaatccggttcggtgctacgtcacctacatctgga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||    
T  4079091 tgcagcacaataacaacaaacagaaataaagtaaagtgcgataaaaaatagcacaagagattttgtaatccggttcgatgctacgtcacctacatctgga 4078992  T
Q  107 ggcattcatgccaagaaaggaaattaactctcaatagtataagttcctagtcttatgtgtacacaccttgttcactgcctcttgaagcacaaatagagga 206  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4078991 ggcattcatgtcaagaaaggaaattaactctcaatagtatcagttcctagtcttatgtgaacacaccttgttcactgcctcttgaagcacaaatagagga 4078892  T
Q  207 tctacgttaatagctcccaactttgctagcacatctgcacaagcattcccttcgtgaagggtgtgatgaagagatattgtccaatctttttgcatgaagt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| || |    
T  4078891 tctacgttaatagctcccaactttgctagcacatctgcacaagtattcccttcgtgaagggtgtgatgaagagatattgtctaatctttttgcat-aaat 4078793  T
Q  307 ctcgaataatctctaactcattagcataatgatgaaactaagtttttccctatg 360  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4078792 ctcgaataatctctaactcattagcataatgatgaaactaagattttccctatg 4078739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 188 - 342
Target Start/End: Original strand, 47748323 - 47748477
Alignment:
Q  188 ttgaagcacaaatagaggatctacgttaatagctcccaactttgctagcacatctgcacaagcattcccttcgtgaagggtgtgatgaagagatattgtc 287  Q
    ||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||| ||     
T  47748323 ttgaagcacaattagaggatctacgtgaatagcttccaactttgctagcacatctgcacaagcattcccttcgcgaaaagtgtgatgaagagatatcgtt 47748422  T
Q  288 caatctttttgcatgaagtctcgaataatctctaactcattagcataatgatgaa 342  Q
    |||||||||| |||||| |||| ||||||||||| |||||| |||||||||||||    
T  47748423 caatcttttttcatgaaatctctaataatctctagctcattcgcataatgatgaa 47748477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 12607278 - 12607394
Alignment:
Q  73 aatccggttcggtgctacgtcacctacatctggaggcattcatgccaagaaaggaaattaactctcaatagtataagttcctagtcttatgtgtacacac 172  Q
    ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||  | ||| |||||||| |||||||||||||||||| ||| ||    
T  12607278 aatccagttcggtgcaacgtcacctacatctggaggcatccatgccaagaaaggaaatccattctaaatagtattagttcctagtcttatgtgaacaaac 12607377  T
Q  173 cttgttcactgcctctt 189  Q
    |||||||| ||||||||    
T  12607378 cttgttcagtgcctctt 12607394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 269 - 345
Target Start/End: Complemental strand, 50076844 - 50076768
Alignment:
Q  269 gtgatgaagagatattgtccaatctttttgcatgaagtctcgaataatctctaactcattagcataatgatgaaact 345  Q
    |||||| |||| ||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||||||||    
T  50076844 gtgatgcagagctattgtccaatcttttttcatgaaatctctaataatctctagctcattagcataatgatgaaact 50076768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 21678818 - 21678750
Alignment:
Q  118 caagaaaggaaattaactctcaatagtataagttcctagtcttatgtgtacacaccttgttcactgcct 186  Q
    ||||| |||||||| |||||||||||||| |||||||||||||||||| ||| || |||||||| ||||    
T  21678818 caagataggaaattcactctcaatagtattagttcctagtcttatgtgaacaaactttgttcaccgcct 21678750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 50076130 - 50076066
Alignment:
Q  281 tattgtccaatctttttgcatgaagtctcgaataatctctaactcattagcataatgatgaaact 345  Q
    ||||||||||||||||| |||||| |||| |||||||||||  || ||| |||||||||||||||    
T  50076130 tattgtccaatcttttttcatgaaatctctaataatctctagttctttaacataatgatgaaact 50076066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 12248587 - 12248486
Alignment:
Q  30 aaataaagtaaagtgcgataaa-aaatagcataagagattttgcaatccggttcggtgctacgtcacctacatctggaggcattcatgccaagaaaggaa 128  Q
    |||||||||||| ||| ||||| ||||| || | |||||||   || || ||||||||| | |||| ||||||||  |||||| ||||||||||||||||    
T  12248587 aaataaagtaaaatgcaataaagaaataacacatgagatttgataaccctgttcggtgcaatgtcaactacatctaaaggcatccatgccaagaaaggaa 12248488  T
Q  129 at 130  Q
    ||    
T  12248487 at 12248486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 14643486 - 14643526
Alignment:
Q  137 tcaatagtataagttcctagtcttatgtgtacacaccttgt 177  Q
    |||||||||| |||||||||||||||||| ||| |||||||    
T  14643486 tcaatagtatcagttcctagtcttatgtgaacaaaccttgt 14643526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 56079024 - 56079076
Alignment:
Q  79 gttcggtgctacgtcacctacatctggaggcattcatgccaagaaaggaaatt 131  Q
    |||| |||| ||||||||||||||||||| ||  |||||||||||||| ||||    
T  56079024 gttctgtgcaacgtcacctacatctggagacaaccatgccaagaaagggaatt 56079076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 188 - 345
Target Start/End: Complemental strand, 41406080 - 41405923
Alignment:
Q  188 ttgaagcacaaatagaggatctacgttaatagctcccaactttgctagcacatctgcacaagcattcccttcgtgaagggtgtgatgaagagatattgtc 287  Q
    ||||||||||| || ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||     
T  41406080 ttgaagcacaattaaaggatctacgtcaatagctcccaactttactagcacatctgcacaagcattcccttcgcgaaaggtgtgatgaagagataatgtt 41405981  T
Q  288 caatctttttgcatgaagtctcgaataatctctaactcattagcataatgatgaaact 345  Q
    |||||| ||| |||||| |||| |||||||||   ||||||||||||||| |||||||    
T  41405980 caatctattttcatgaaatctctaataatctcgggctcattagcataatgttgaaact 41405923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 259 - 345
Target Start/End: Original strand, 7219452 - 7219538
Alignment:
Q  259 cgtgaagggtgtgatgaagagatattgtccaatctttttgcatgaagtctcgaataatctctaactcattagcataatgatgaaact 345  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| | ||| |||||||||||||||| ||||||    
T  7219452 cgtgaaaggtgtgatgaagagatattgtccaatctttttgcatgaaatctctaataaacgctagctcattagcataatgacgaaact 7219538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 3400178 - 3400093
Alignment:
Q  80 ttcggtgctacgtcacctacatctggaggcattcatgccaagaaaggaaattaactctcaatagtataagttcctagtcttatgtg 165  Q
    |||||||| || |||||||||||||||||||| ||||||||||||||||||  ||||||||||| || ||||||||||||||||||    
T  3400178 ttcggtgcaacatcacctacatctggaggcatccatgccaagaaaggaaatccactctcaatagcattagttcctagtcttatgtg 3400093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 22450202 - 22450129
Alignment:
Q  79 gttcggtgctacgtcacctacatctggaggcattcatgccaagaaaggaaattaactctcaatagtataagttc 152  Q
    ||||||||| ||  |||||||||||  ||| || ||||| ||||||||||||| |||||||||||||| |||||    
T  22450202 gttcggtgcaacaccacctacatctaaagggatccatgcgaagaaaggaaatttactctcaatagtattagttc 22450129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 7219393 - 7219452
Alignment:
Q  185 ctcttgaagcacaaatagaggatctacgttaatagctcccaactttgctagcacatctgc 244  Q
    |||||||| || |||||||||||||   |||||||||| |||||||| ||||||||||||    
T  7219393 ctcttgaaacataaatagaggatctcatttaatagctctcaactttgttagcacatctgc 7219452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 40199892 - 40199993
Alignment:
Q  79 gttcggtgctacgtcacctacatctggaggcattcatgccaagaaaggaaattaactctcaatagtataagttc--ctagtcttatgtgtacacaccttg 176  Q
    ||||||||| |||| |||||| ||||| ||| ||||  ||| |||| |||||| |||||||||||||| |||||  |||||||||| || ||| ||||||    
T  40199892 gttcggtgcaacgtaacctac-tctgggggctttcac-ccatgaaatgaaattcactctcaatagtattagttcgtctagtcttatatgaacaaaccttg 40199989  T
Q  177 ttca 180  Q
    ||||    
T  40199990 ttca 40199993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 185 - 345
Target Start/End: Original strand, 8865134 - 8865294
Alignment:
Q  185 ctcttgaagcacaaatagaggatctacgttaatagctcccaactttgctagcacatctgcacaagcattcccttcgtgaagggtgtgatgaagagatatt 284  Q
    ||||||||| | || ||||||||||||||||  |||| |||||||||||||||| ||||||||||||||||||||  ||| ||||||||||| | |||||    
T  8865134 ctcttgaagtataattagaggatctacgttagaagcttccaactttgctagcacgtctgcacaagcattcccttcacgaaaggtgtgatgaataaatatt 8865233  T
Q  285 gtccaatctttttgcatgaagtctcgaataatctctaactcattagcataatgatgaaact 345  Q
    ||||| ||||||| |||||| |||  |||||| ||||||||||||||||||||||||||||    
T  8865234 gtccattcttttttcatgaaatctttaataatttctaactcattagcataatgatgaaact 8865294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 183 - 342
Target Start/End: Complemental strand, 25584666 - 25584507
Alignment:
Q  183 gcctcttgaagcacaaatagaggatctacgttaatagctcccaactttgctagcacatctgcacaagcattcccttcgtgaagggtgtgatgaagagata 282  Q
    ||||| |||||||||| ||||||||| ||| |||||||||||| ||||||| ||| || || |||| || ||| |||| ||| |||||||||||||| ||    
T  25584666 gcctcctgaagcacaattagaggatcaacgataatagctcccagctttgcttgcatatttgtacaaacactcctttcgcgaaaggtgtgatgaagagtta 25584567  T
Q  283 ttgtccaatctttttgcatgaagtctcgaataatctctaactcattagcataatgatgaa 342  Q
    |||||||||||||||||||||| |||| |||||||| || |||||||  |||||||||||    
T  25584566 ttgtccaatctttttgcatgaaatctctaataatctgtagctcattatgataatgatgaa 25584507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 15986403 - 15986358
Alignment:
Q  92 tcacctacatctggaggcattcatgccaagaaaggaaattaactct 137  Q
    |||| ||||| ||||||||| ||||||||||||||||||| |||||    
T  15986403 tcacttacatatggaggcatccatgccaagaaaggaaattcactct 15986358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 30 - 186
Target Start/End: Original strand, 16842471 - 16842627
Alignment:
Q  30 aaataaagtaaagtgcgataaaaaatagcataagagattttgcaatccggttcggtgctacgtcacctacatctggaggcattcatgccaagaaaggaaa 129  Q
    ||||||| |||||| |||||||||| | |  ||||||||| | ||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  16842471 aaataaaataaagtacgataaaaaagaacccaagagatttggtaatccagttcggtgcaacgtcacctacatctggaggcatccatgccaagaaaggaaa 16842570  T
Q  130 ttaactctcaatagtataagttcctagtcttatgtgtacacaccttgttcactgcct 186  Q
    || |||||||||| ||| |||| ||||||||||||| ||| ||||||||||||||||    
T  16842571 ttcactctcaataatattagtttctagtcttatgtgaacaaaccttgttcactgcct 16842627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 18312008 - 18312109
Alignment:
Q  79 gttcggtgctacgtcacctacatctggaggcattcatgccaagaaaggaaattaactctcaatagtataagttcctagtcttatgtgtacacaccttgtt 178  Q
    ||||||||| |||| |||||||||||||| ||| ||||||||||||  ||||   ||| ||||||||| | |||||||||||||||| ||| ||||| ||    
T  18312008 gttcggtgcaacgttacctacatctggagacatccatgccaagaaaaaaaatactctcccaatagtatcaattcctagtcttatgtgaacaaaccttatt 18312107  T
Q  179 ca 180  Q
    ||    
T  18312108 ca 18312109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 24549987 - 24550056
Alignment:
Q  120 agaaaggaaattaactctcaatagtataagttcctagtcttatgtgtacacaccttgttcactgcctctt 189  Q
    |||||||||||  |||||||||| ||| |||| ||||||||||||| ||| || ||||||||||||||||    
T  24549987 agaaaggaaatccactctcaataatatcagtttctagtcttatgtgaacaaactttgttcactgcctctt 24550056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 189
Target Start/End: Original strand, 24509948 - 24510046
Alignment:
Q  91 gtcacctacatctggaggcattcatgccaagaaaggaaa-ttaactctcaatagtataagttcctagtcttatgtgtacacaccttgttcactgcctctt 189  Q
    ||||||||||| ||| ||||||||  ||||||||  ||| || | |||||||||||| |||||||||||||||||  ||| |||||||||||| ||||||    
T  24509948 gtcacctacatttgggggcattcaa-ccaagaaaaaaaaattcattctcaatagtatcagttcctagtcttatgttaacaaaccttgttcacttcctctt 24510046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 5323937 - 5323885
Alignment:
Q  290 atctttttgcatgaagtctcgaataatctctaactcattagcataatgatgaa 342  Q
    ||||||||||||||| |||| |||||||||||  ||||||||||| |||||||    
T  5323937 atctttttgcatgaaatctcaaataatctctatttcattagcatagtgatgaa 5323885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 343
Target Start/End: Complemental strand, 34541052 - 34540900
Alignment:
Q  191 aagcacaaatagaggatctacgttaatagctcccaactttgctagcacatctgcacaagcattcccttcgtgaagggtgtgatgaagagatattgtccaa 290  Q
    ||||| || |||| |||||| |||||||  ||||| |||| |||| | || |||||||  ||||||||   ||| ||||||||||| | ||||    |||    
T  34541052 aagcataattagaagatctaagttaatatatcccatcttttctagaaaatatgcacaaatattccctttacgaaaggtgtgatgaacaaatatgacacaa 34540953  T
Q  291 tctttttgcatgaagtctcgaataatctctaactcattagcataatgatgaaa 343  Q
    | ||| || ||||| |||| |||||||||||||||||||||||  ||||||||    
T  34540952 tatttctgtatgaaatctctaataatctctaactcattagcatggtgatgaaa 34540900  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 129
Target Start/End: Original strand, 41136058 - 41136156
Alignment:
Q  33 taaagtaaagtgcgataaa--aaatagcataagagattttgcaatccggttcggtgctacgtcacctacatctggaggcattcatgccaagaaaggaaa 129  Q
    ||||||||||||| |||||  ||| | || | ||||||| | ||||| ||||||||| | ||||||||||||||| || || ||| |||||||||||||    
T  41136058 taaagtaaagtgcaataaagaaaaaaacacatgagatttggtaatccagttcggtgcaatgtcacctacatctgggggtatccataccaagaaaggaaa 41136156  T

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Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 201 - 342
Target Start/End: Complemental strand, 10795543 - 10795403
Alignment:
Q  201 agaggatctacgttaatagctcccaactttgctagcacatctgcacaagcattcccttcgtgaagggtgtgatgaagagatattgtccaatctttttgca 300  Q
    ||||||||||| |||||||||   ||||||||||||||||||||  |||||||| || |||||| || |||||| |||| |||||| |||||||||| ||    
T  10795543 agaggatctactttaatagcttttaactttgctagcacatctgcgtaagcattctct-cgtgaaaggcgtgatgcagagctattgttcaatcttttttca 10795445  T
Q  301 tgaagtctcgaataatctctaactcattagcataatgatgaa 342  Q
    |||| ||||  |||||||||| ||||||||||||||||||||    
T  10795444 tgaaatctcttataatctctagctcattagcataatgatgaa 10795403  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 191 - 321
Target Start/End: Original strand, 20820731 - 20820860
Alignment:
Q  191 aagcacaaatagaggatctacgttaatagctcccaactttgctagcacatctgcacaagcattcccttcgtgaagggtgtgatgaagagatattgtccaa 290  Q
    |||||||| ||||| |||||||||| |||||| |||||||||||||| || |||||||||||| |||||  ||| ||||||||||||||||||||| |||    
T  20820731 aagcacaattagagaatctacgttagtagctctcaactttgctagcatat-tgcacaagcatttccttcacgaaaggtgtgatgaagagatattgttcaa 20820829  T
Q  291 tctttttgcatgaagtctcgaataatctcta 321  Q
    ||||||| ||||||   || |||||||||||    
T  20820830 tcttttttcatgaaaattccaataatctcta 20820860  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 13281286 - 13281106
Alignment:
Q  10 agcacaataacaacaaacagaaataaagtaaagtgcgataaaaaatagcataagagattttgcaatccggttcggtgctacgtcacctacatctggagg- 108  Q
    |||||||||| |||| ||||||||||||||||||| |||||| || | ||  | |||||| | || || ||||||||| || |||||||||| ||| ||     
T  13281286 agcacaataaaaacagacagaaataaagtaaagtgtgataaagaagaacacgatagatttggtaacccagttcggtgcaacatcacctacatatgggggg 13281187  T
Q  109 -cattcatgccaagaaaggaaattaactctcaatagtataagttcctagtcttatgtgtacacaccttgttcactgcctctt 189  Q
     ||| ||  ||||||||||||||| |||||||||||||| |||||||||||  ||||| ||| |||||||||| | ||||||    
T  13281186 gcatccac-ccaagaaaggaaattcactctcaatagtatcagttcctagtcacatgtgaacaaaccttgttcattacctctt 13281106  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 186
Target Start/End: Original strand, 30630887 - 30631040
Alignment:
Q  33 taaagtaaagtgcgataaa-aaatagcataagagattttgcaatccggttcggtgctacgtcacctacatctggaggcattcatgccaagaaaggaaatt 131  Q
    ||||||||||||||||||| ||||| || | ||||||| | ||||   || ||||| ||||||||||||| |||||||||||||| ||| |||| |||||    
T  30630887 taaagtaaagtgcgataaagaaataacacatgagatttggtaatctcatttggtgcaacgtcacctacatttggaggcattcatgtcaacaaagaaaatt 30630986  T
Q  132 aactctcaatagtataagttcctagtcttatgtgtacacaccttgttcactgcct 186  Q
     |||||  ||||||   |||  |||||||||||| ||  ||||||||||||||||    
T  30630987 cactct-tatagtactggtttgtagtcttatgtgaactaaccttgttcactgcct 30631040  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 345
Target Start/End: Complemental strand, 15581848 - 15581691
Alignment:
Q  189 tgaagcacaaatagaggatctacgttaatagctcccaactttgctagcacatctgcacaagcattcccttcgtgaagggtgtgatgaagagatattgtcc 288  Q
    |||||||||| |||| ||||||| ||| ||| ||| | ||||| || ||||||  || ||||||| |||||  ||| ||||||||| ||| |||||||||    
T  15581848 tgaagcacaattagatgatctacattattagttccgagctttgataacacatcatcataagcatttccttcacgaaaggtgtgatggagatatattgtcc 15581749  T
Q  289 aatctttttgcatg-aagtctcgaataatctctaactcattagcataatgatgaaact 345  Q
    ||||| | || | | || | |  ||| ||||||| || ||||||||||||||||||||    
T  15581748 aatctctatgtaagaaaatttataattatctctagcttattagcataatgatgaaact 15581691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 3322604 - 3322666
Alignment:
Q  117 ccaagaaaggaaattaactctcaatagtataagttcctagtcttatgtgtacacaccttgttc 179  Q
    ||||||||||||||| |||||||||||||| |||| ||||| |||| || ||  |||||||||    
T  3322604 ccaagaaaggaaattcactctcaatagtattagtttctagttttatatgaaccaaccttgttc 3322666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 5741 - 5579
Alignment:
Q  26 acagaaataaagtaaagtgcgataaaaaatagcataagagattttgcaatccggttcggtgctacgtcacctacatctggaggcattcatgccaagaaag 125  Q
    |||||||||||||||||||| ||||| || | ||||||||||||   ||     ||  |||| ||||||| ||||| | ||||||| |||||||||||||    
T  5741 acagaaataaagtaaagtgcaataaagaagaacataagagatttgataacttattttagtgcaacgtcacttacatttagaggcatccatgccaagaaag 5642  T
Q  126 gaaattaactctcaatagtataagttcctagtcttatgtgtacacaccttgttcactgcctctt 189  Q
    ||| || ||| |||||||||| ||||| ||||||||||||  || ||||||||||||| |||||    
T  5641 gaa-ttcactttcaatagtattagttcatagtcttatgtgagcaaaccttgttcactgtctctt 5579  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 9419240 - 9419182
Alignment:
Q  79 gttcggtgctacgtcacctacatctggaggcattcatgccaagaaaggaaattaactct 137  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||||| |||||| |||||    
T  9419240 gttcggtgcaacgtcacctacatctcgaggcatccatgccaagaaaagaaattcactct 9419182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 17881836 - 17881908
Alignment:
Q  117 ccaagaaaggaaattaactctcaatagtataagttcctagtcttatgtgtacacaccttgttcactgcctctt 189  Q
    |||| |||||||||  | |||||||||||| || ||||| ||||||||| ||| |||||| ||||||||||||    
T  17881836 ccaacaaaggaaatctattctcaatagtattagctcctactcttatgtgaacaaaccttggtcactgcctctt 17881908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 6004358 - 6004405
Alignment:
Q  117 ccaagaaaggaaattaactctcaatagtataagtt--cctagtcttat 162  Q
    ||||||||||||||| |||||||||||||| ||||  |||||||||||    
T  6004358 ccaagaaaggaaattcactctcaatagtattagttcacctagtcttat 6004405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 189
Target Start/End: Original strand, 35655896 - 35656006
Alignment:
Q  79 gttcggtgctacgtcacctacatctggaggcattcatgccaagaaaggaaattaactctcaatagtataagttcctagtcttatgtgtacacaccttgtt 178  Q
    ||||||| | ||||||||||||||||  || | ||   |||| ||| |||||| ||||| |||||||| | |||||||||||||||| ||| ||||||||    
T  35655896 gttcggtacaacgtcacctacatctgaggggaatccacccaaaaaaagaaattcactctaaatagtatcaattcctagtcttatgtgaacaaaccttgtt 35655995  T
Q  179 cactgcctctt 189  Q
    |||| ||||||    
T  35655996 cacttcctctt 35656006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 343
Target Start/End: Original strand, 5292116 - 5292233
Alignment:
Q  226 actttgctagcacatctgcacaagcattcccttcgtgaagggtgtgatgaagagatattgtccaatctttttgcatgaagtctcgaataatctctaactc 325  Q
    |||||||||| ||||||| |||| || |||||| | |||  |||||  ||| | ||||  | |||||||| | |||||| |||| ||||||||||  |||    
T  5292116 actttgctagtacatctgtacaaacactcccttagcgaaacgtgtggcgaaaatatatgatacaatctttgtacatgaaatctctaataatctctggctc 5292215  T
Q  326 attagcataatgatgaaa 343  Q
    |||||||| |||||||||    
T  5292216 attagcatgatgatgaaa 5292233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 9375782 - 9375692
Alignment:
Q  90 cgtcacctacatctggaggcattcatgccaagaaaggaaattaactctcaatagtataagttcctagtcttatgtgtacacaccttgttcac 181  Q
    ||||||||| |||||| || |||||  || |||||||||||   ||||||||||||| ||||| |||||||||||| ||| || ||||||||    
T  9375782 cgtcacctatatctgggggtattcac-cctagaaaggaaataccctctcaatagtattagttcttagtcttatgtgaacaaactttgttcac 9375692  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 173806 - 173766
Alignment:
Q  137 tcaatagtataagttcctagtcttatgtgtacacaccttgt 177  Q
    |||||||||| |||||||||||||||||| ||| |||||||    
T  173806 tcaatagtatcagttcctagtcttatgtgaacaaaccttgt 173766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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