View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4761_low_8 (Length: 301)
Name: NF4761_low_8
Description: NF4761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4761_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 4226156 - 4225873
Alignment:
| Q |
1 |
tgtgaaatttcgaaatattcagcatcataaaaatacaatgaaaatgttattttaattattttctaaatggttagtttttaaattgtgttagtttttgtag |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4226156 |
tgtgaaatttcgaa-tattcaccatcataaaaatacaatgaaaatgttattttaattattttctaaatggttagtttttaaattgtgttagtttttgtag |
4226058 |
T |
|
| Q |
101 |
ttatcaatgagaagaagaaaaataactacttaagtgaacagtgttttacatttgtaacaacaatgaagatatcaaattaatgagttatcttcatcannnn |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4226057 |
ttatcaatgagaagaagaaaaacaactacttaagtgaacagtgttttacatttgtaacaacaatgaagatatcaaattaatgagttatcttcattatttt |
4225958 |
T |
|
| Q |
201 |
nnnaaagagttaaataagtttttcatctgtaaaaaattatcgaacttcgcttttagtccccataataaaaagtgtacggctttga |
285 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4225957 |
tttaaagggttaaataagtttttcatctttaaaaaattatcgaacttcgcttttagtccccataataaaaagtgtacggctttga |
4225873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University