View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4762-Insertion-1 (Length: 780)

Name: NF4762-Insertion-1
Description: NF4762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4762-Insertion-1
NF4762-Insertion-1
[»] chr6 (1 HSPs)
chr6 (6-775)||(25181913-25182682)


Alignment Details
Target: chr6 (Bit Score: 716; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 6 - 775
Target Start/End: Original strand, 25181913 - 25182682
Alignment:
Q  6 cacaaacagcttcaaatcccgtccacgttttcctctttcatcttccatttccacaatgccttcctccgacgaagaacccaccacaaaccctataccaaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25181913 cacaaacagcttcaaatcccgtccacgttttcctctttcatcttccatttccacaatgccttcctccgacgaagaacccaccacaaaccctataccaaaa 25182012  T
Q  106 caccccccacgttcatcatcaacctccacaaaattcttcgaagaagtactcaacggaccaaaccaacgttgtttagaaaatttccgaatggacaaagtcg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25182013 caccccccacgttcatcatcaacctccacaaaattcttcgaagaagtactcaacggaccaaaccaacgttgtttagaaaatttccgaatggacaaagtcg 25182112  T
Q  206 tattctataaactatgtgatattctagaaaccaagggtttattacgtgacacgaataggattaaaattgaagagcaattagctannnnnnngttcataat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  25182113 tattctataaactatgtgatattctagaaaccaagggtttattacgtgacacgaataggattaaaattgaagagcaattagctatttttttgttcataat 25182212  T
Q  306 tggtcataatttgaggattagaggtgttcaagagttgtttcactattccggtgagactattagtcggcattttaataatgttttgaatgcggttatgtcg 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25182213 tggtcataatttgaggattagaggtgttcaagagttgtttcactattccggtgagactattagtcggcattttaataatgttttgaatgcggttatgtcg 25182312  T
Q  406 atttctaaagagtattttcagcctccgggggaggatgttgcttcgatgattgcggaagatgataggttttttccgtattttaaggtagggttttgattaa 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25182313 atttctaaagagtattttcagcctccgggggaggatgttgcttcgatgattgcggaagatgataggttttttccgtattttaaggtagggttttgattaa 25182412  T
Q  506 tttgtttgatatgcatgttgtttcgaattgattgtgtcaaatagatgttatagcgtagtggaatttgattagatcgatggtgctgtcaattgtggatcac 605  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25182413 tttgtttgatatgcatgttgtttcgaattgattctgtcaaatagatgttatagcgtagtggaatttgattagatcgatggtgctgtcaattgtggatcac 25182512  T
Q  606 aggaaatagcagcttgtcgctaggctagagtactctagggttactacaactgctactacctccgatcactattataagcnnnnnnnttacttttagattc 705  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  25182513 aggaaatagcagcttgtcgctaggctagagtactatagggttactacaactgctactacctccgatcactattataagcaaaaaaattacttttagattc 25182612  T
Q  706 attgcataactgatgtatttgcttatattattaaccagttacttatttttcaggttcattgaagaactgg 775  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25182613 attgcataactgatgtatttgcttatattattgaccagttacttatttttcaggttcattgaagaactgg 25182682  T

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