View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4762-Insertion-2 (Length: 758)
Name: NF4762-Insertion-2
Description: NF4762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4762-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 332
Target Start/End: Complemental strand, 49755718 - 49755383
Alignment:
| Q |
6 |
cagtactctcttctgtctcttgcttttcaatccaacggccaatggaactcttcgttttctttcatctctaccgtgttcctctaacagaactcgcctagtc |
105 |
Q |
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| T |
49755718 |
cagtactctcttctgtctcttgcttttcaatccaacggccaatggaactcttcgttttctttcatctctaccgtgttcctctaaaagaactcgcctagtc |
49755619 |
T |
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| Q |
106 |
ggaagagttaactcggttccaacgaacgacgaagagtcatgatgttgtggaagagtggaccgagaagggagatagtggaagaagaaagtggaaattgcta |
205 |
Q |
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| T |
49755618 |
ggaagagttaactccgttccaacgaacgaagaagagtcatgatgttgtggaagagtggatcgagaagggagatagtggaagaagaaagtggaaattgcta |
49755519 |
T |
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| Q |
206 |
ttccaatgagaaggaaagggactcgatttagaagca---------tgtttgttctcgttcttggaagaggattatcacgatgggatgatgaatctgtggt |
296 |
Q |
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| T |
49755518 |
ttccaatgagaaggaaagggactcgatttagaagcatgttgatgatgtttgttctcgttcttggaagaggattatcacgatgggatgatgaatctgtggt |
49755419 |
T |
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| Q |
297 |
ttgatctcttgtttggtttctgtgaattagttcaga |
332 |
Q |
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| T |
49755418 |
ttgatctcttgtttggtttctgtgaattagttcaga |
49755383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 390 - 635
Target Start/End: Complemental strand, 49755325 - 49755076
Alignment:
| Q |
390 |
agaattgaagatggagagggaattgctctgaatagtgatgcatgaatattggctttataatcgttccaaggtgcccgcatttggtgcattttctctcctt |
489 |
Q |
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| T |
49755325 |
agaattgaagatggagagggaattgctctgaatagtgatgcatgaatattggctttataatcgttccaacgtgcccgcatttggtgcattttctctcctt |
49755226 |
T |
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| Q |
490 |
tacnnnnnnnccaagtttgaggttcaatatttttctaattaattaaataaataaat----gtgaagtgatcagtaattctcatttaacgaatcacacgag |
585 |
Q |
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| T |
49755225 |
tactttttttccaagtttgaggttcaatatttttctaattaattaaataaataaataaatgtgaagtgatcagtaattctcatttaacgaatcacacgag |
49755126 |
T |
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| Q |
586 |
agccaagggaggagtaatacatgctatcgccacattctcatgtcatgttt |
635 |
Q |
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| T |
49755125 |
agccaagggaggagtaatacatgctatcgccacattctcatgtcatgttt |
49755076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 664 - 721
Target Start/End: Complemental strand, 49754998 - 49754941
Alignment:
| Q |
664 |
atatgcttcttgcaatagaaacagtttggtatgtgttgaccaatagggatgaattcgg |
721 |
Q |
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| T |
49754998 |
atatgcttcttgcaatagaaacagtttggcatgtgttgaccaatagggatgaattcgg |
49754941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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