View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4762-Insertion-4 (Length: 174)
Name: NF4762-Insertion-4
Description: NF4762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4762-Insertion-4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 142; Significance: 8e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 8e-75
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 53453285 - 53453442
Alignment:
| Q |
8 |
ctctcaattcaacaaccgtccatgtctcatcaacggcgacaccggcgaaaccctaacctactccgacgtccacctcaccgtccgcaaattcgcctctggt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| |
|
|
| T |
53453285 |
ctctcaattcaacaaccgtccatgtctcatcaacggcgacaccggcgaaaccctaacctactccgacgtccacctcaccgtccgcaaaatcgcagccggt |
53453384 |
T |
|
| Q |
108 |
ctaaacactcttggaatccaacaaggtgatgtcatcatgatcgtcctccgtaactctc |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53453385 |
ctaaacactcttggaatccaacaaggtgatgtcatcatgatcgtcctccgtaactctc |
53453442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University