View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4762_low_1 (Length: 449)
Name: NF4762_low_1
Description: NF4762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4762_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Original strand, 52542831 - 52543229
Alignment:
| Q |
16 |
aacctgtgcaccagttgcatcccctttaataaccgtcggggtcaagaacaccatcctaggattctccataccaccataaggaaaactaggtggcaaaacc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52542831 |
aacctgtgcaccagttgcatcccctttaataactgttggggtcaagaacaccatcctaggattctccataccaccataaggaaaactaggtggcaaaacc |
52542930 |
T |
|
| Q |
116 |
aacaaatcaaatctctcccactcataatttccaaacaatctttccccttccctaatcatatcctcagttccatcaaactctttagcagctgaatccaaca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52542931 |
aacaaatcaaatctctcccactcataatttccaaacaatctttccccttccctaatcatatcctcagttccatcaaactctttagcagctgaatccaaca |
52543030 |
T |
|
| Q |
216 |
gttgagtcacagattcagcataaaccctagtcctgggccccacctccctgttatcaagctccccaactgcaaatgcaaaaaggtaaggtggaattggaag |
315 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52543031 |
gttgagtcacagcttcagcataaaccctagtcctgggccccacctccctgttatcaagctccccaactgcaaatgcaaaaaggtaaggtggaattggaag |
52543130 |
T |
|
| Q |
316 |
ttccatctcaaactcttccaccactctaccttgccaagaattcccaaaacactcgtcgtcaaccaatgattcgcggcgcgccacatgttttgcagccat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
52543131 |
ttccatctcaaactcttccaccactctacctttggacgaattcccaaaacactcgtcgtcaaccaatgattcgcggagcgccacatgttttgcagccat |
52543229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University