View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4762_low_2 (Length: 309)

Name: NF4762_low_2
Description: NF4762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4762_low_2
NF4762_low_2
[»] chr2 (1 HSPs)
chr2 (5-294)||(15393326-15393618)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 5 - 294
Target Start/End: Complemental strand, 15393618 - 15393326
Alignment:
Q  5 caaaagtaaaacacttcactgggtggttccattcatcaacaagattttagctaagtaaacaaattatttaacaaatgtccgttcttcccaacatattgtc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15393618 caaaagtaaaacacttcactgggtggttccattcatcaacaagattttagctaagtaaacaaattatttaacaaatgtccgttcttcccaacataatgtc 15393519  T
Q  105 acaccgccgatcctcaacgacgccaaatcaccaccgtgtaa---cagatatgtaactctctgatcccacaatgaaaaacgggaaggaaaatctcaccaat 201  Q
     ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15393518 tcaccgccgatcctcaacgacgccaaatcaccaccgtgtaattacagatatgtaactctctgatcccacaatgaaaaacgggaaggaaaatctcaccaat 15393419  T
Q  202 tacacaataaaggaaaggagacgaaacaatcaattaagaaactccaaatatcttaaatcattcaggctgaaattgaatcttccatggtgattt 294  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15393418 tagacaataaaggaaaggagacgaaacaatcaattaagaaactccaaatatcttaaatcattcaggctgaaattgaatcttccatgatgattt 15393326  T

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