View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4762_low_3 (Length: 295)
Name: NF4762_low_3
Description: NF4762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4762_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 5744653 - 5744906
Alignment:
| Q |
18 |
ctcacatgaaaccaaatgttaaactttcgcttgatttgtactaggcattcgtgcatttaccgtttaatttatacttccattaattctatattaaattttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5744653 |
ctcacatgaaaccaaatgttaaactttggcttgatttgtactaggcattcgtgcatttaccgtttaatttatacttccatt----ctatattaaattttt |
5744748 |
T |
|
| Q |
118 |
tcttatatttaaaagacaacctaaatttatactattctctcgtgacaaactgaatgtggtgatgcacccgaacttttcagattcactattgagaataggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5744749 |
tcttatatttaaaagacaacctaaatttatactattgtctcgtgacaaactgaatgtggtgatgcacccgaacttttcagattcactattgagaataggt |
5744848 |
T |
|
| Q |
218 |
taaatccaaggcatctggataacatttaatttgcataacttctttctgataacaaata |
275 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
5744849 |
taaatccaaggcatctggataacattttatttgcataacttcttcctgataacgaata |
5744906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 5781612 - 5781865
Alignment:
| Q |
18 |
ctcacatgaaaccaaatgttaaactttcgcttgatttgtactaggcattcgtgcatttaccgtttaatttatacttccattaattctatattaaattttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5781612 |
ctcacatgaaaccaaatgttaaactttggcttgatttgtactaggcattcgtgcatttaccgtttaatttatacttccatt----ctatattaaattttt |
5781707 |
T |
|
| Q |
118 |
tcttatatttaaaagacaacctaaatttatactattctctcgtgacaaactgaatgtggtgatgcacccgaacttttcagattcactattgagaataggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5781708 |
tcttatatttaaaagacaacctaaatttatactattgtctcgtgacaaactgaatgtggtgatgcacccgaacttttcagattcactattgagaataggt |
5781807 |
T |
|
| Q |
218 |
taaatccaaggcatctggataacatttaatttgcataacttctttctgataacaaata |
275 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
5781808 |
taaatccaaggcatctggataacattttatttgcataacttcttcctgataacgaata |
5781865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 5695396 - 5695595
Alignment:
| Q |
18 |
ctcacatgaaaccaaatgttaaactttcgcttgatttgtactaggcattcgtgcatttaccgtttaatttatacttccattaattctatattaaattttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5695396 |
ctcacatgaaaccaaatgttaaactttggcttgatttgtactaggcatttgtgcatttaccgtttaatttatacttccatt----ctatattaaatttta |
5695491 |
T |
|
| Q |
118 |
tcttatatttaaaagacaacctaaatttatactattctctcgtgacaaactgaatgtggtgatgcacccgaacttttcagattcactattgagaataggt |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5695492 |
gcatatatttaaaagacaacctaaatttatactattgtctcgtgacaaactgaatgtggtgatgcacccgaacttttcagattcagcattgagaataggt |
5695591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 5792656 - 5792813
Alignment:
| Q |
18 |
ctcacatgaaaccaaatgttaaactttcgcttgatttgtactaggcattcgtgcatttaccgtttaatttatacttc-cattaattctatattaaatttt |
116 |
Q |
| |
|
||||||| |||| |||||||||| ||| |||||||||||||||| ||||||||| ||||| || ||||| | |||| ||||||| |||||||| |
|
|
| T |
5792656 |
ctcacataaaactaaatgttaaagttttgcttgatttgtactag-------tgcatttactgtttatttaatactacacatt--ttctatactaaatttt |
5792746 |
T |
|
| Q |
117 |
ttcttatatttaaaagacaacctaaatttatactattctctcgtgacaaactgaatgtggtgatgca |
183 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| |
|
|
| T |
5792747 |
tgcatatatttaaaagacaacctaaatttatactattgtctctggacaaactgaatgcggtgatgca |
5792813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 5792859 - 5792912
Alignment:
| Q |
181 |
gcacccgaacttttcagattcactattgagaataggttaaatccaaggcatctg |
234 |
Q |
| |
|
|||||||| ||||| ||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
5792859 |
gcacccgatcttttaagatttagcattgagaataggttaaatccaaggcatctg |
5792912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 5669470 - 5669510
Alignment:
| Q |
18 |
ctcacatgaaaccaaatgttaaactttcgcttgatttgtac |
58 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
5669470 |
ctcacatgaaaccaaatgttatatttttgcttgatttgtac |
5669510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 5693141 - 5693181
Alignment:
| Q |
18 |
ctcacatgaaaccaaatgttaaactttcgcttgatttgtac |
58 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
5693141 |
ctcacatgaaaccaaatgttatatttttgcttgatttgtac |
5693181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 9431914 - 9431840
Alignment:
| Q |
18 |
ctcacatgaaaccaaatgttaaactttcgcttgatttgtactaggcattcgtgcatttaccgtttaatttatact |
92 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||||||||||||||| | ||| |||||||| ||||| |||||||| |
|
|
| T |
9431914 |
ctcacataaaaccaaatgttaaattttttcttgatttgtactagaccttcaagcatttactgtttactttatact |
9431840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 9407135 - 9407071
Alignment:
| Q |
26 |
aaaccaaatgttaaactttcgcttgatttgtactaggcattcgtgcatttaccgtttaatttata |
90 |
Q |
| |
|
||||||| ||||||| ||| |||||||||||||||| | ||| |||||||||||||| |||||| |
|
|
| T |
9407135 |
aaaccaattgttaaatttttgcttgatttgtactagaccttcaagcatttaccgtttactttata |
9407071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 9445820 - 9445746
Alignment:
| Q |
18 |
ctcacatgaaaccaaatgttaaactttcgcttgatttgtactaggcattcgtgcatttaccgtttaatttatact |
92 |
Q |
| |
|
||||||| ||||||||||||||| ||| |||| |||||||| || | ||| |||||||| ||||| |||||||| |
|
|
| T |
9445820 |
ctcacataaaaccaaatgttaaatttttgctttatttgtaccagaccttcaagcatttacagtttattttatact |
9445746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 9995885 - 9995961
Alignment:
| Q |
16 |
cactcacatgaaaccaaatgttaaactttcgcttgatttgtactaggcattcgtgcatttaccgtttaatttatact |
92 |
Q |
| |
|
||||| |||| ||||||||||||| ||| |||||||||||||||| | ||| ||||||| | ||||||||||||| |
|
|
| T |
9995885 |
cactcccatggaaccaaatgttaattttttgcttgatttgtactagacgttcaagcatttatcatttaatttatact |
9995961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 10006846 - 10006922
Alignment:
| Q |
16 |
cactcacatgaaaccaaatgttaaactttcgcttgatttgtactaggcattcgtgcatttaccgtttaatttatact |
92 |
Q |
| |
|
||||| ||||||||||||||| || ||| |||||||||||||||| | ||| ||||||| | ||||||||||||| |
|
|
| T |
10006846 |
cactctcatgaaaccaaatgtcaattttttgcttgatttgtactagacgttcaagcatttatcatttaatttatact |
10006922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University