View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4763-Insertion-1 (Length: 870)

Name: NF4763-Insertion-1
Description: NF4763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4763-Insertion-1
NF4763-Insertion-1
[»] chr3 (12 HSPs)
chr3 (112-189)||(19963848-19963925)
chr3 (112-181)||(20026499-20026568)
chr3 (109-189)||(19743090-19743167)
chr3 (423-535)||(19968089-19968201)
chr3 (118-182)||(20019687-20019751)
chr3 (109-189)||(19968523-19968606)
chr3 (249-311)||(19968382-19968444)
chr3 (109-189)||(14855678-14855761)
chr3 (441-535)||(14856066-14856161)
chr3 (249-311)||(20019837-20019899)
chr3 (423-535)||(19743447-19743559)
chr3 (269-313)||(20026675-20026719)
[»] chr6 (1 HSPs)
chr6 (15-64)||(10739482-10739531)


Alignment Details
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 19963925 - 19963848
Alignment:
Q  112 cttaccatttccaactacttcatcatcagaacttgatagttcataaattaataaatgatcctctttatcagaaccttc 189  Q
    ||||| |||| |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  19963925 cttacgattttcaaccacttcatcatcggaacttgatagttcataaactaataaatgatcctctttatcagaagcttc 19963848  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 20026499 - 20026568
Alignment:
Q  112 cttaccatttccaactacttcatcatcagaacttgatagttcataaattaataaatgatcctctttatca 181  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  20026499 cttacgattttcaactacttcatcatcagaacttgatagttcataacctaataaatgatcctctttatca 20026568  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 19743090 - 19743167
Alignment:
Q  109 agccttaccatttccaactacttcatcatcagaacttgatagttcataaattaataaatgatcctctttatcagaaccttc 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   | ||  |||||||||||||||||| ||||    
T  19743090 agccttaccatttccaactacttcatcatcagaacttgatagttcataa---actatgtgatcctctttatcagaagcttc 19743167  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 423 - 535
Target Start/End: Complemental strand, 19968201 - 19968089
Alignment:
Q  423 acaaaccctcaaataacgagaaaacgacattaactcttcatcaaaactaggattatcatgtttctatatgtcttttacatcataaacctcaatgcatggt 522  Q
    ||||||||||||| | ||||||||||||| |||||||||||| |||| ||||||||||  | || | || || ||| ||| ||| |||||||||||||||    
T  19968201 acaaaccctcaaacatcgagaaaacgacactaactcttcatctaaacaaggattatcacatctccacatatccttttcattatagacctcaatgcatggt 19968102  T
Q  523 gaattctcgtatg 535  Q
    |||||||| ||||    
T  19968101 gaattctcatatg 19968089  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 20019687 - 20019751
Alignment:
Q  118 atttccaactacttcatcatcagaacttgatagttcataaattaataaatgatcctctttatcag 182  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||   |||||||||| |||||    
T  20019687 atttccaactacttcatcatcagaacttgatagttcataaactaatttgtgatcctcttcatcag 20019751  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 19968606 - 19968523
Alignment:
Q  109 agccttaccatttccaactacttcatcatca---gaacttgatagttcataaattaataaatgatcctctttatcagaaccttc 189  Q
    ||||||||||||| |||||||||||||||||   ||||||||||||||||||| ||||   |||||||||| ||||||| ||||    
T  19968606 agccttaccattttcaactacttcatcatcatcagaacttgatagttcataaactaatttgtgatcctcttcatcagaagcttc 19968523  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 19968444 - 19968382
Alignment:
Q  249 atctacttcctcaattgattttgattgcttccaccagtcatagaatctagaagtaacatttgg 311  Q
    |||| |||||||| ||||||| ||||||| |||||| |||||| |||||||||||||||||||    
T  19968444 atctccttcctcacttgatttcgattgctgccaccaatcatagtatctagaagtaacatttgg 19968382  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 14855678 - 14855761
Alignment:
Q  109 agccttaccatttccaactacttcatcatca---gaacttgatagttcataaattaataaatgatcctctttatcagaaccttc 189  Q
    |||| |||||||| |||||||||||||||||   ||||||||||||||||||| ||||   |||||||||| ||||||| ||||    
T  14855678 agccctaccattttcaactacttcatcatcatcggaacttgatagttcataaactaatttgtgatcctcttcatcagaagcttc 14855761  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 441 - 535
Target Start/End: Original strand, 14856066 - 14856161
Alignment:
Q  441 agaaaacgacattaactcttcatcaaaactaggattatcatgtttctatatgtcttttacatcataaa-cctcaatgcatggtgaattctcgtatg 535  Q
    ||||||||||  |||||||||||| |||| |||| |||||| | || | || || ||| ||| ||||| |||||||||||||||||||||||||||    
T  14856066 agaaaacgacgctaactcttcatctaaacaaggactatcatatctccacatatccttttcattataaaacctcaatgcatggtgaattctcgtatg 14856161  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 20019837 - 20019899
Alignment:
Q  249 atctacttcctcaattgattttgattgcttccaccagtcatagaatctagaagtaacatttgg 311  Q
    |||| |||||||| |||||||  |||||| |||||| |||||| |||||||||||||||||||    
T  20019837 atctccttcctcacttgatttcaattgctgccaccaatcatagtatctagaagtaacatttgg 20019899  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 423 - 535
Target Start/End: Original strand, 19743447 - 19743559
Alignment:
Q  423 acaaaccctcaaataacgagaaaacgacattaactcttcatcaaaactaggattatcatgtttctatatgtcttttacatcataaacctcaatgcatggt 522  Q
    ||||||||||||| | ||||||||||||  |||||||| ||| |||| ||||||| ||  | || | || || ||| ||| ||| |||||||| ||||||    
T  19743447 acaaaccctcaaacatcgagaaaacgactctaactctttatctaaacaaggattaccacatctccacatatccttttcattatagacctcaatacatggt 19743546  T
Q  523 gaattctcgtatg 535  Q
    |||||||| ||||    
T  19743547 gaattctcatatg 19743559  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 20026675 - 20026719
Alignment:
Q  269 ttgattgcttccaccagtcatagaatctagaagtaacatttggct 313  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||    
T  20026675 ttgattgcttccaccaatcatagtatctagaagtaacacttggct 20026719  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 10739482 - 10739531
Alignment:
Q  15 aacacaaaagccttagaatcaagcttgctgcaagataaagaagaggaaca 64  Q
    |||||||||| ||| |||||||||||||| | |||||||||||| |||||    
T  10739482 aacacaaaagacttggaatcaagcttgctactagataaagaagaagaaca 10739531  T

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