View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4763-Insertion-10 (Length: 536)
Name: NF4763-Insertion-10
Description: NF4763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4763-Insertion-10 |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 7 - 536
Target Start/End: Original strand, 33531344 - 33531873
Alignment:
| Q |
7 |
aatattacaaccctagattatgaaagaaagcaatattttcgatatccatagaaaatcatacaaccctagatttatccttccaaatagtttcttgataaga |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33531344 |
aatattacaaccctagattatgaaagaaagcaatattttcgatatccatagaaaatcatacaaccctagatttatccttccaaatagtttcttgataaga |
33531443 |
T |
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| Q |
107 |
atgattgagaaagatcaagttagggttgaaattcttgagcttgcaaattatctgagatgccataagaatacaattgttccttagttctctaaaccaataa |
206 |
Q |
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| T |
33531444 |
atgattgagaaagatcaagttaggtttgaaattcttgagcttgcaaattatctgagatgccataagaatacaattgttccttagttctctaaaccaataa |
33531543 |
T |
|
| Q |
207 |
agctgcatccacttgcatgtgaacatctccacaaacaatcttttattccaagtcttgagttcacatttcacttaagatacaattacataggaaacccaat |
306 |
Q |
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| T |
33531544 |
agctgcatccacttgcatgtgaacatctccacaaaaaatcttttattccaagtcttgagttcacatttcacttaagatacaattacataggaaacccaat |
33531643 |
T |
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| Q |
307 |
actaggcacacttcgataatatcccaagttctggatgatcaaacaacattttaaaataaaattagtcagtttcaatgccttcttataaagcactttgtct |
406 |
Q |
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| T |
33531644 |
aataggcacacttcgataatatcccaagttctggatgatcaaacaacattttaaaataaaattagtcagtttcaatgccttcttataaagcactttgtct |
33531743 |
T |
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| Q |
407 |
tagttcaagaaaaattctttgacaaagaacttgtaaaaacattttaactgaacctttagctttaaaatgatttcaagtcttttcttagaacttttattag |
506 |
Q |
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| T |
33531744 |
tagttgaagaaaaattctttgacaaagaacttgtaaaaacattttaactgaacctttagctttaaaatgatttcaagtcttttcttagaacttttattag |
33531843 |
T |
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| Q |
507 |
tgatctttgttagagtgaatatatgtgtaa |
536 |
Q |
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| T |
33531844 |
tgatctttgttagagtgaatatatgtgtaa |
33531873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 7 - 536
Target Start/End: Complemental strand, 16870003 - 16869474
Alignment:
| Q |
7 |
aatattacaaccctagattatgaaagaaagcaatattttcgatatccatagaaaatcatacaaccctagatttatccttccaaatagtttcttgataaga |
106 |
Q |
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| T |
16870003 |
aatattacaaccctagattatgaaagaaagcaatattttcgatatccatagaaaatcatacaaccctagatttatccttccaaatagtttcttgataaga |
16869904 |
T |
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| Q |
107 |
atgattgagaaagatcaagttagggttgaaattcttgagcttgcaaattatctgagatgccataagaatacaattgttccttagttctctaaaccaataa |
206 |
Q |
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| T |
16869903 |
atgattgagaaagatcaagttaggtttgaaattcttgagcttgcaaattatctgagatgccataagaatacaattgttccttagttctctaaaccaataa |
16869804 |
T |
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| Q |
207 |
agctgcatccacttgcatgtgaacatctccacaaacaatcttttattccaagtcttgagttcacatttcacttaagatacaattacataggaaacccaat |
306 |
Q |
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| T |
16869803 |
agctgcatccacttgcatgtgaacatctccacaaaaaatcttttattccaagtcttgagttcacatttcacttaagatacaattacataggaaacccaat |
16869704 |
T |
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| Q |
307 |
actaggcacacttcgataatatcccaagttctggatgatcaaacaacattttaaaataaaattagtcagtttcaatgccttcttataaagcactttgtct |
406 |
Q |
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| T |
16869703 |
aataggcacacttcgataatatcccaagttctggatgatcaaacaacattttaaaataaaattagtcagtttcaatgccttcttataaagcactttgtct |
16869604 |
T |
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| Q |
407 |
tagttcaagaaaaattctttgacaaagaacttgtaaaaacattttaactgaacctttagctttaaaatgatttcaagtcttttcttagaacttttattag |
506 |
Q |
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| T |
16869603 |
tagttgaagaaaaattctttgacaaagaacttgtaaaaacattttaactgaacctttagctttaaaatgatttcaagtcttttcttagaacttttattag |
16869504 |
T |
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| Q |
507 |
tgatctttgttagagtgaatatatgtgtaa |
536 |
Q |
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| T |
16869503 |
tgatctttgttagagtgaatatatgtgtaa |
16869474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 377 - 495
Target Start/End: Complemental strand, 25015295 - 25015176
Alignment:
| Q |
377 |
ttcaatgccttcttataaagcactttgtcttagttcaagaaaaattctttgacaaagaacttgtaaaaacattttaactgaacctttagc-tttaaaatg |
475 |
Q |
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|||||||||| |||||||| ||| || |||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |
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| T |
25015295 |
ttcaatgcctgcttataaaacacactgccttatttgaagaaaaattctttgacaaagaacttgtaaaaacattttaactgtgcctttagcattttaaatg |
25015196 |
T |
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| Q |
476 |
atttcaagtcttttcttaga |
495 |
Q |
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| T |
25015195 |
atttcaagtcttttcataga |
25015176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 377 - 536
Target Start/End: Complemental strand, 24992771 - 24992603
Alignment:
| Q |
377 |
ttcaatgccttcttataaagcactttgtcttagttcaagaaaaattctttgacaaagaacttgtaaaaacattttaactgaacctttagc-tttaaaatg |
475 |
Q |
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||||||||||||||||||| || | |||||| || ||||||||||| |||||||| || ||||||||||||| ||||| |||| || ||||||||| |
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| T |
24992771 |
ttcaatgccttcttataaaacaaatagtcttatttgaagaaaaattccttgacaaataatctgtaaaaacatttaaactgtgccttgtgcttttaaaatg |
24992672 |
T |
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| Q |
476 |
atttcaagtcttttcttagaacttttatt--------agtgatctttgttagagtgaatatatgtgtaa |
536 |
Q |
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| T |
24992671 |
atttcaagtcttttcatagaacacttattgtaaacaaagtgatttttgttagagtgaatatatgtgtaa |
24992603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 178
Target Start/End: Complemental strand, 25015691 - 25015537
Alignment:
| Q |
25 |
tatgaaagaaagcaatattttcgatatccatagaaaatcatacaaccctagatttatccttccaaatagtttcttgataagaatgattgagaaagatcaa |
124 |
Q |
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|||||||||| |||| ||||| || | |||||||| | |||| |||| | |||||||||| ||||| |||||||||||||| | ||||| | ||||| || |
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| T |
25015691 |
tatgaaagaaggcaaaattttagacacccatagaataacatataaccttggatttatcctgccaaaaagtttcttgataagcaagattgtgcaagataaa |
25015592 |
T |
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| Q |
125 |
g-ttagggttgaaattcttgagcttgcaaattatctgagatgccataagaataca |
178 |
Q |
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| T |
25015591 |
gcattggtttgtaattcttgaacttgcaaactatctgagatgccaaaggaataca |
25015537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 24993045 - 24992968
Alignment:
| Q |
23 |
attatgaaagaaagcaatattttcgatatccatagaaaatcatacaaccctagatttatccttccaaatagtttcttg |
100 |
Q |
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||||||||||||||||| | |||||| | |||| ||||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
24993045 |
attatgaaagaaagcaaaaatttcgacactcataaaaaatcatagaaccctggatttatccttccaaaaagtttcttg |
24992968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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