View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4763-Insertion-11 (Length: 478)
Name: NF4763-Insertion-11
Description: NF4763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4763-Insertion-11 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 180 - 478
Target Start/End: Original strand, 42020846 - 42021144
Alignment:
| Q |
180 |
aaaccaaagtgacatacttgtaatagccgtaagaaaataaagggaaaatataatagtcatttcattactaatctatcgtaatgtgttgcattcttcacaa |
279 |
Q |
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| T |
42020846 |
aaaccaaagtgacatacttgtaatagccgtaagaaaataaagggaagatataatagtcatttcattactaatctattgtaatgtgttgcattcttcacaa |
42020945 |
T |
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| Q |
280 |
ttgttacccgaaaagaaatgcaagaatcaatatccttcaaacatagaacttttcaaacttcaatatcctttaagcataaaaaattaacttctcgttaatt |
379 |
Q |
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| T |
42020946 |
ttattacccgaaaagaaatgcaagaatcaatatccttcaaacatagaacttttcaaacttcaatatcctttaagcataaaaaattaacttctcgttaatt |
42021045 |
T |
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| Q |
380 |
tgtctttctacaaatcaaacgataaaagcatgttagaatcacaacctgttgtactcctttttattttagttgggaataaaatcaaacatttgtaatata |
478 |
Q |
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| T |
42021046 |
tgtctttctacaaatcaaacgataaaagcatgttagaatcacaacctgttgtactcctttttattttaattgggaataaaatcaaacatttctaatata |
42021144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 42020624 - 42020797
Alignment:
| Q |
8 |
atttcatctcctacttatatagatatatcaatcactgaaataccactttaatttgataatagagagaaagtacacacaccgtatattacaaagggggaaa |
107 |
Q |
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| T |
42020624 |
atttcatctcctacttatataaatatatcaatcactgaaataccactttaatttgacaatagagagaaagtacacacaccgtatattacaaagggggaaa |
42020723 |
T |
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| Q |
108 |
catcaatctcattgatatctaaagagaagaaaatgttgtcatggctaaatagatagattcactcttatgcacaa |
181 |
Q |
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| T |
42020724 |
catcaatctcattgatatctaaagagaagaaaatgttgtcatggctaaatagataaattcactcttatgcacaa |
42020797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 467
Target Start/End: Complemental strand, 27890563 - 27890522
Alignment:
| Q |
426 |
tgttgtactcctttttattttagttgggaataaaatcaaaca |
467 |
Q |
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| T |
27890563 |
tgttgtcctcctatttgttttagttgggaataaaatcaaaca |
27890522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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