View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4763-Insertion-12 (Length: 452)
Name: NF4763-Insertion-12
Description: NF4763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4763-Insertion-12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 166 - 452
Target Start/End: Original strand, 36602121 - 36602407
Alignment:
| Q |
166 |
aatatgtgtgcgagggttgtaaaccctcgagtattgagtttcattccatttgatataaaaacaaaataagttcaaaagtgattgtcatcatgagagagtt |
265 |
Q |
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| T |
36602121 |
aatatgtgtgcgagggttgtaaaccctcgagtattgagtttgattccatttgatatgaaaacaaaataagtttaaaagtgattgtcatcatgagagagtt |
36602220 |
T |
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| Q |
266 |
caaagtatctacaaaccatgaagaacatatcctaaacttcccagtgtagacaattcgaagacaagatgcatttctccctctacacaacatccaacaagct |
365 |
Q |
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| T |
36602221 |
caaagtatctacaaaccatgaagaacgtatcctaaacttcccagtgtagacaattcgaagacaagatgcatttctccctctacacaacatccaacaagct |
36602320 |
T |
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| Q |
366 |
ttgcagtattaggatgatcaacatgagcaataactcctaactcagatagaaagccagctgtcttttcatctgtgctccctgtagtca |
452 |
Q |
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| T |
36602321 |
ttgcggtattaggatgatcaacatgagcaataactcctaactcagatagaaagccagctgtcttttcatctgtgctccctgtagtca |
36602407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 36601928 - 36602086
Alignment:
| Q |
7 |
attattcgcctttgacaattctcatgcaaatagagaagaccatcagcaattccaagagcaactttataccttttactccaatccaatttggttttatctg |
106 |
Q |
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| T |
36601928 |
attattcgcctttgacaattctcatgcaaatagagaagaccatcagcaattccgagagcaactttataccttttactccaatccaatttggttttatctg |
36602027 |
T |
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| Q |
107 |
aacctgaaatacatcatgagggaataagctataagtacatttaaagttgaaagcatgtt |
165 |
Q |
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| T |
36602028 |
aacctgaaatacatcatgagggaataagctataagtacatttaaagttgaaagtatgtt |
36602086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 418
Target Start/End: Complemental strand, 47014181 - 47014089
Alignment:
| Q |
326 |
acaagatgcatttctccctctacacaacatccaacaagctttgcagtattaggatgatcaacatgagcaataactcctaactcagatagaaag |
418 |
Q |
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| T |
47014181 |
acaaggtgcatttctccttctacaccacatccaataagtctggcagtgttaggatggtttagatgagcaataatgcctagctcagatagaaag |
47014089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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