View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4763-Insertion-13 (Length: 434)
Name: NF4763-Insertion-13
Description: NF4763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4763-Insertion-13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 75 - 434
Target Start/End: Complemental strand, 33462221 - 33461866
Alignment:
| Q |
75 |
gtaagttttagtggttaatttatcatgattaatatgtaattgatatataaaatatttgcaggtttgataacatgttgtttaccatgcatcacatttggcc |
174 |
Q |
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| T |
33462221 |
gtaagttttagtggttaatttatcatgattaatatgtaattgatatataaaatatttgcaggtttgataacatgttgtttaccatgcatcacatttggcc |
33462122 |
T |
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| Q |
175 |
aaattgcagaagttgtggatgaaggacgtagttgtaagtacacaacattaaatacctatttttctatatatatatgtactcaaaatatgtatactttgat |
274 |
Q |
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| T |
33462121 |
aaattgcagaagttgtggatgaaggacgtagttgtaagtacacaacattaaatacctatttttctatatata----tactcaaaatatgtatactttgat |
33462026 |
T |
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| Q |
275 |
tcatgatatttctaattaatgaatgcagcttgtgctatgcaaggatgtgtatacggtttactgatgaccattacatgtcattggctatactcatgtcttt |
374 |
Q |
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| T |
33462025 |
tcatgatattttgaattaatgaatgcagcttgtgctatgcaaggatgtgtatacggtttactgatgaccattacatgtcattggctatactcatgtcttt |
33461926 |
T |
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| Q |
375 |
acagagagaaattgagagcaaagtatggtttaccagcagaaccttgttgtgattgttgtg |
434 |
Q |
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| T |
33461925 |
acagagagaaactgagagcaaaatatggtttaccagctgaaccatgttgtgattgttgtg |
33461866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 33462322 - 33462294
Alignment:
| Q |
8 |
gagaaaacccaggaacatgtaagatcaat |
36 |
Q |
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| T |
33462322 |
gagaaaacccaggaacatgtaagatcaat |
33462294 |
T |
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