View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4763-Insertion-15 (Length: 405)
Name: NF4763-Insertion-15
Description: NF4763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4763-Insertion-15 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 14122142 - 14121845
Alignment:
| Q |
8 |
ttatcgttgtgtggcgagaaccgtggcagtgaatgcaatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagacttggtg |
107 |
Q |
| |
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||||||||||| |||||||| |||||| |||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14122142 |
ttatcgttgtgcggcgagaatcgtggcggtgaatgcaacatcggcgatggtagagcagacaacaacggcgacgaaacgacaaaggcttgtagacttggtg |
14122043 |
T |
|
| Q |
108 |
gtgagatcaaccaattagtggcagttaaattgcatttggcgctgcaaacgtcagagtgatttcagttgcnnnnnnnattttatgcaaaataaataagaat |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||||||||| ||| |
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| T |
14122042 |
gtgagatcaaccaattagtggcagttaaattgcatttggcgctgcaaacatgggagtgatttcagttgctttttttattttatacaaaataaataataat |
14121943 |
T |
|
| Q |
208 |
aaaaaatgaaataagagagtgtgcgtgacttttccactgagcacgtgagtcgtgtattgtcgtgcattttaaatgtcgtgtgaaatagcaatgctctt |
305 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14121942 |
aaaaaataaaataagagagtgtgcgtgacttttccactgagcacgtgagtcgtgtattgtcgtgcgttttaaatgtcgtgtgaaatagcaatgctctt |
14121845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 20008227 - 20008525
Alignment:
| Q |
8 |
ttatcgttgtgtggcgagaaccgtggcagtgaatgcaatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagacttggtg |
107 |
Q |
| |
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||||||||||| |||||||| |||||| |||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20008227 |
ttatcgttgtgcggcgagaatcgtggcggtgaatgcaacatcggcgatggtagagcagacaacaacggcgacgaaacgacaaaggcttgtagacttggtg |
20008326 |
T |
|
| Q |
108 |
gtgagatcaaccaattagtggcagttaaattgcatttggcgctgcaaacgtcagagtga-tttcagttgcnnnnnnnattttatgcaaaataaataagaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||| ||||||| ||||||||||||||| |
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|
| T |
20008327 |
gtgagatcaaccaattagtggcagttaaattgcatttggcgctgcaaacatgggagtgattttcagttgctttttttattttatacaaaataaataagaa |
20008426 |
T |
|
| Q |
207 |
taaaaaatgaaataagagagtgtgcgtgacttttccactgagcacgtgagtcgtgtattgtcgtgcattttaaatgtcgtgtgaaatagcaatgctctt |
305 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20008427 |
taaaaaataaaataagagagtgtgcgtgacttttccactgagcacgtgagtcgtgtattgtcgtgcgttttaaatgtcgtgtgaaatagcaatgctctt |
20008525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 49622232 - 49622064
Alignment:
| Q |
8 |
ttatcgttgtgtggcgagaaccgtggcagtgaatgcaatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagacttggtg |
107 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
49622232 |
ttatagttgtgcggcgagaaccgtggcggtgaatacaaaagcggcgatggtagagcagacaacaacggcgacgaaacgacaaaggtctgtagaattggtg |
49622133 |
T |
|
| Q |
108 |
gtgagatcaaccaattagtggcagttaaattgcatttggcgctgcaaacgtcagagtgatttcagttgc |
176 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||||||||||||| |||||| ||||||||| |||||| |
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|
| T |
49622132 |
gtgagatcaatcaattagtggcggtgaaattgcatttggcgctgtaaacgtgggagtgatttgagttgc |
49622064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 53325707 - 53326002
Alignment:
| Q |
8 |
ttatcgttgtgtggcgagaaccgtggcagtgaatgcaatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagacttggtg |
107 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||| |
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|
| T |
53325707 |
ttatagttgtgtggcgagaaccgtggaggtgaatacaacagcggcgatggtagagcagacaacaatggcgacgaaacgacaaaggcttgtagaattggtg |
53325806 |
T |
|
| Q |
108 |
gtgagatcaaccaattagtggcagttaaattgcatttggcgctgcaaacgtcagagtgatttcagttgcnnnnnnnattttatgcaaaataaataagaat |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||||| |||||| ||| ||||| |
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|
| T |
53325807 |
gtgagatcaaccaattagtggcggttaaattgcatttggcgctgtaaacgtgggagtgatttcagttgctttttttattttatacaaaatcaatgagaat |
53325906 |
T |
|
| Q |
208 |
aaaaaatgaaataagagagtgtgcgtgacttt-tccactgagcacgtgagtcgtgtattgtcgtgcattttaaatgtcgtgtgaaatagcaatgctct |
304 |
Q |
| |
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| ||| | ||||| ||||||||||||||||| | |||| ||||||||||||||| |||||||||| ||| ||||||||||||||||| |||| |||| |
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|
| T |
53325907 |
ataaagtaaaata--agagtgtgcgtgactttgtacactaagcacgtgagtcgtgcattgtcgtgcgtttgaaatgtcgtgtgaaataacaatactct |
53326002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 37321725 - 37321657
Alignment:
| Q |
304 |
tttcataaaaacttactgctttaaactcttgaagagcgtccttaaaatactcgttaacattttccttaa |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||| |
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| T |
37321725 |
tttcataaaaacttactgctttaaactcttgaagagtgtccttaagatacccgttaacattttccttaa |
37321657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 5481928 - 5481988
Alignment:
| Q |
237 |
ttttccactgagcacgtgagtcgtgtattgtcgtgcattttaaatgtcgtgtgaaatagcaat |
299 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||| || |||||| ||||||||||||||| |
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| T |
5481928 |
ttttacactaagcacgtgagtcgtgtattgtcgtgc-gttgaaatgt-gtgtgaaatagcaat |
5481988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 8 - 281
Target Start/End: Original strand, 15636365 - 15636642
Alignment:
| Q |
8 |
ttatcgttgtgtggcgagaaccgtggcagtgaatgcaatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagacttggtg |
107 |
Q |
| |
|
|||| |||||| | ||||||||||||| |||||| ||| || |||||||||||| |||||||||||||||||||| ||||||||||||| || || ||| |
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|
| T |
15636365 |
ttatagttgtgcgacgagaaccgtggcggtgaatacaacagtggcgatggtagagaagacaacaacggcgacgaaaagacaaaggcttgtggaatttgtg |
15636464 |
T |
|
| Q |
108 |
gtgagatcaaccaattagtggcagttaaattgcatttggcgctgcaaacgtcagagtgatttcagttgcnnnnnnnattttatgcaaaataaataagaat |
207 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| |||||||| || |||||| |||||||||||||||| ||||||| |||||| ||||||||| |
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|
| T |
15636465 |
gtgagatcaaccaattggtggcggttaaattgtatttggcggtgtaaacgtgggagtgatttcagttgctttttttattttatacaaaatcaataagaat |
15636564 |
T |
|
| Q |
208 |
aaaaaatgaa--ataagagagtgtgcgtgac--ttttccactgagcacgtgagtcgtgtattgtcgtgcattttaaat |
281 |
Q |
| |
|
||||||| || ||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||| ||| |||| |
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|
| T |
15636565 |
aaaaaataaaatataagagagtgtgcgtgacttttttacactaagcacgtgagtcgtgcattgtcgtgcgtttgaaat |
15636642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 35048477 - 35048309
Alignment:
| Q |
8 |
ttatcgttgtgtggcgagaaccgtggcagtgaatgcaatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagacttggtg |
107 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||| |||||| |||||| |
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|
| T |
35048477 |
ttatagttgtgcggcgagaaccgtggcggtgaatacaaaagcggcgatggtagagcagacaacaacggcgacgaaacgagaaaggtctgtagaattggtg |
35048378 |
T |
|
| Q |
108 |
gtgagatcaaccaattagtggcagttaaattgcatttggcgctgcaaacgtcagagtgatttcagttgc |
176 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||||||||||||| ||| || ||||||||| |||||| |
|
|
| T |
35048377 |
gtgagatcaatcaattagtggcggtgaaattgcatttggcgctgtaaatgtgggagtgatttgagttgc |
35048309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 35056389 - 35056449
Alignment:
| Q |
91 |
ggcttgtagacttggtggtgagatcaaccaattagtggcagttaaattgcatttggcgctg |
151 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||| | |||| |||||| ||||||| |
|
|
| T |
35056389 |
ggcttgtagaattggtggtgagattaaccaattagtggcggctaaagtgcattcggcgctg |
35056449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 35056246 - 35056295
Alignment:
| Q |
8 |
ttatcgttgtgtggcgagaaccgtggcagtgaatgcaatagcggcgatgg |
57 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||| || ||||||||||| |
|
|
| T |
35056246 |
ttatagttgtgcggcgagaaccgtggcggtgaatgtaacagcggcgatgg |
35056295 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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