View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4763-Insertion-17 (Length: 424)

Name: NF4763-Insertion-17
Description: NF4763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4763-Insertion-17
NF4763-Insertion-17
[»] chr1 (3 HSPs)
chr1 (8-424)||(52148724-52149138)
chr1 (8-312)||(48563162-48563459)
chr1 (110-154)||(33323901-33323945)
[»] chr7 (4 HSPs)
chr7 (19-308)||(16994397-16994679)
chr7 (33-312)||(28002574-28002847)
chr7 (114-204)||(27900287-27900377)
chr7 (114-238)||(10623360-10623479)
[»] chr8 (4 HSPs)
chr8 (19-312)||(1029581-1029866)
chr8 (19-295)||(41566100-41566369)
chr8 (71-312)||(11954449-11954675)
chr8 (132-208)||(38731816-38731892)
[»] chr3 (3 HSPs)
chr3 (19-312)||(35740028-35740314)
chr3 (21-163)||(7903391-7903530)
chr3 (64-101)||(43335490-43335527)
[»] chr4 (4 HSPs)
chr4 (20-310)||(35260088-35260367)
chr4 (45-312)||(38011505-38011766)
chr4 (20-238)||(2815004-2815218)
chr4 (272-312)||(29459972-29460012)
[»] chr2 (5 HSPs)
chr2 (62-208)||(39228860-39229002)
chr2 (114-189)||(12419502-12419577)
chr2 (114-189)||(12431562-12431637)
chr2 (114-159)||(5136197-5136242)
chr2 (256-308)||(14694956-14695008)
[»] chr6 (1 HSPs)
chr6 (114-163)||(6257238-6257287)
[»] chr5 (1 HSPs)
chr5 (272-312)||(19932375-19932415)


Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 8 - 424
Target Start/End: Original strand, 52148724 - 52149138
Alignment:
Q  8 atcagacactaggtggttgaagacttttggcctctttttgatgtggtttgattt-aaaaacttgaaagggtatggttctgttaacccgaaagggttgcgc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| ||||||||||||||||||||||    
T  52148724 atcagacactaggtggttgaagacttttggcctctttttgatgtggtttgatttcaaaaacctaaaagggtatggttatgttaacccgaaagggttgcgc 52148823  T
Q  107 taattaataacgtattggaatcgtccctcgatctgagttcttaagcgtatgtttgaacatcattgtgtttggtggcctgactgcttcgcctctctgatgt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  52148824 taattaataacgtattggaatcgtccctcgatctgagttcttaagcgtatgtttgaacgtcattgtgtttggtggcctgactgcttcgcctctctgatgt 52148923  T
Q  207 ttccatgtctatttagacctgcaggtttcaagccagcatcttgtctggttacactctgctatttgatgctcgaaagagcttttttgcttactgctttgtt 306  Q
    ||||||||||||| |||||||||||||||||| ||   |||||||| | ||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  52148924 ttccatgtctattgagacctgcaggtttcaagtca---tcttgtctagctacactctggtatttgatgctcgaaagagcttttttgcttgctgctttgtt 52149020  T
Q  307 cagggaacttcgcgccggtacacgggttcactgggttgcgccatgatcagtgatttttgttatgatagatgagggttgattaggtttgtatcccctttta 406  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52149021 cagggagcttcgcgccggtacacgggttcactgggttgcgccatgatcagtgatttttgttatgatagatgagggttgattaggtttgtatcccctttta 52149120  T
Q  407 ggttgtactgggccaggt 424  Q
    ||||||||||||||||||    
T  52149121 ggttgtactgggccaggt 52149138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 48563162 - 48563459
Alignment:
Q  8 atcagacactaggtggttgaagacttttggcctctttttgatgtggtttgatttaa-aaacttgaaagggtatggttctgttaacccgaaagggttgcgc 106  Q
    |||||| ||| |||||| |||||||||||||||  ||| ||||||||||| ||| | |||| ||||||||||||||||| |||||| ||||||||    |    
T  48563162 atcagagactgggtggtcgaagacttttggcctagttt-gatgtggtttggttttataaacctgaaagggtatggttctattaacctgaaagggt----c 48563256  T
Q  107 taattaataacgtattggaatcgtccctcgatctgagttcttaagcgtatgtttgaacatcattgtgtttggtggcctgactgcttcgcctctctgatgt 206  Q
    |  ||| |||| ||||||| || |||| |||||| |||||||| |||||||||||||  |  ||||||||||| || ||||| ||| | ||||||| |||    
T  48563257 tggttactaacatattggactcatcccacgatctaagttcttacgcgtatgtttgaatctagttgtgtttggttgcttgactactttgactctctgttgt 48563356  T
Q  207 ttccatgtctatttagacctgcaggtttcaagccagcatcttgtctggttacactctgctatttgatgctcgaaagagcttttttgcttactgctttgtt 306  Q
    ||||| |||| || ||| ||||||||||||||    | |||||| ||  |||| |||| ||||||||||||||||||||| || |||||  || ||||||    
T  48563357 ttccaggtctgttgagatctgcaggtttcaag---tcgtcttgtatgcctacagtctggtatttgatgctcgaaagagctattatgcttgttgttttgtt 48563453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 33323901 - 33323945
Alignment:
Q  110 ttaataacgtattggaatcgtccctcgatctgagttcttaagcgt 154  Q
    ||||| |||||||||| || |||||||||||||||||||| ||||    
T  33323901 ttaatgacgtattggactcatccctcgatctgagttcttacgcgt 33323945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 16994397 - 16994679
Alignment:
Q  19 ggtggttgaagacttttggcctctttttgatgtggtttgatttaaaaacttgaaagggtatggttctgttaacccgaaagggttgcgctaattaataacg 118  Q
    ||||||||||||||||||||||||||||||||||||  | ||  |||||||||||||||||| || |||||||||||||||||    || |||| ||       
T  16994397 ggtggttgaagacttttggcctctttttgatgtggtaggtttctaaaacttgaaagggtatgattttgttaacccgaaagggt----ctgattactagtt 16994492  T
Q  119 tattggaatcgtccctcgatctgagttcttaagcgtatgtttgaacatcattgtgtttggtggcctgactgcttcgcctctctgatgtttccatgtctat 218  Q
    ||||||| |||||||| |||||||||||||| | |||||||||||  |  |||||||||||||||||||||||||   |||||||||||| || || | |    
T  16994493 tattggactcgtcccttgatctgagttcttacgtgtatgtttgaatcttgttgtgtttggtggcctgactgcttcaattctctgatgttttcaggtttgt 16994592  T
Q  219 ttagacctgcaggtttcaagccagcatcttgtctggttacactctgctatttgatgctcgaaagagcttttttgcttactgctttgttca 308  Q
    | ||| |||||| |||||||    | |||||||||  ||||||||| |||||||||||| ||||||||||| |||||  |||||||||||    
T  16994593 tgagatctgcagatttcaag---tcgtcttgtctgcctacactctggtatttgatgctcaaaagagcttttatgcttgttgctttgttca 16994679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 312
Target Start/End: Original strand, 28002574 - 28002847
Alignment:
Q  33 tttggcctctttttgatgtggtttgattt-aaaaacttgaaagggtatggttctgttaacccgaaagggttgcgctaattaataacgtattggaatcgtc 131  Q
    ||||||||||||| ||||||| ||| ||| |||||| ||||||||||||  |||| ||| | ||||||||    ||  ||| |||||||||| | || ||    
T  28002574 tttggcctctttt-gatgtggattggtttcaaaaacctgaaagggtatgactctgctaatctgaaagggt----ctggttattaacgtattgaactcatc 28002668  T
Q  132 cctcgatctgagttcttaagc-gtatgtttgaacatcattgtgtttggtggcctgactgcttcgcctctctgatgtttccatgtctatttagacctgcag 230  Q
    |||||||||||||||||| |  || ||||||||  || |||||||||||||||||||| ||||| ||||||||||||| || || | || ||| ||||||    
T  28002669 cctcgatctgagttcttacgatgtctgtttgaatctcgttgtgtttggtggcctgactacttcgactctctgatgttttcaagtatgttgagatctgcag 28002768  T
Q  231 gtttcaagccagcatcttgtctggttacactctgctatttgatgctcgaaagagcttttttgcttactgctttgttcaggga 312  Q
    ||||||||      || ||||||  |||||| || | ||| |||||||||||||||||| ||||| ||||||||||||||||    
T  28002769 gtttcaag---ttgtcgtgtctgcatacactttggttttttatgctcgaaagagcttttatgcttgctgctttgttcaggga 28002847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 27900377 - 27900287
Alignment:
Q  114 taacgtattggaatcgtccctcgatctgagttcttaagcgtatgtttgaacatcattgtgtttggtggcctgactgcttcgcctctctgat 204  Q
    |||| ||||||| || ||||||||||||||||||||  ||||||||||||      ||||||||||||||||||| ||||| |||||||||    
T  27900377 taacatattggactcatccctcgatctgagttcttacacgtatgtttgaaacctgctgtgtttggtggcctgactacttcgactctctgat 27900287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 238
Target Start/End: Original strand, 10623360 - 10623479
Alignment:
Q  114 taacgtattggaatcgtccctcgatctgagttcttaagcgtatgtttgaacatcattgtgtttggtggcctgactgcttcgcctctctgatgtttccatg 213  Q
    |||||||||||| || |||||||||||||||||| | || | |||||||     |||||||||||||| || ||| ||| | ||||||||||||||||      
T  10623360 taacgtattggactcatccctcgatctgagttctaacgcatttgtttga-----attgtgtttggtggtctaacttctttgactctctgatgtttccaga 10623454  T
Q  214 tctatttagacctgcaggtttcaag 238  Q
    | | || ||| ||||||||||||||    
T  10623455 tttgttgagatctgcaggtttcaag 10623479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 1029866 - 1029581
Alignment:
Q  19 ggtggttgaagacttttggcctctttttgatgtggtttgatt-taaaaacttgaaagggtatggttctgttaacccgaaagggttgcgctaattaataac 117  Q
    ||||||||||||||||| |||| |||| || |||||||  || || ||||  | |||||| ||||||| |||||||||||||||    ||  ||| ||||    
T  1029866 ggtggttgaagacttttagcctatttt-gaagtggttttgttctataaacccggaagggtctggttctattaacccgaaagggt----ctg-ttactaac 1029773  T
Q  118 gtattggaatcgtccctcgatctgagttcttaagcgtatgtttgaacatcattgtgtttggtggcctgactgcttcgcctctctgatgtttccatgtcta 217  Q
    |||||||| || |||| ||||||||||||||| |||||||||||||   | ||||||||||  || ||||||||||| ||||||||||||| |||||||     
T  1029772 gtattggactcatcccacgatctgagttcttacgcgtatgtttgaatcccgttgtgtttggctgcttgactgcttcgactctctgatgttttcatgtctg 1029673  T
Q  218 tttagacctgcaggtttcaagccagcatcttgtctggttacactctgctatttgatgctcgaaagagcttttttgcttactgctttgttcaggga 312  Q
    || ||||||||| ||||||||    | | |||| ||  ||||||||| ||||||||||||||||||||| || ||||||||| ||||| ||||||    
T  1029672 ttgagacctgcatgtttcaag---tcgttttgtatgtctacactctggtatttgatgctcgaaagagctattatgcttactgttttgtgcaggga 1029581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 41566100 - 41566369
Alignment:
Q  19 ggtggttgaagacttttggcctctttttgatgtggtttgatttaa-aaacttgaaagggtatggttctgttaacccgaaagggttgcgctaattaataac 117  Q
    |||||| ||||||||||||||| |||| ||||||||||| ||| | ||||  ||||||||||||||||||||||||  ||||||    ||  ||| ||||    
T  41566100 ggtggtcgaagacttttggcctatttt-gatgtggtttgcttttataaacccgaaagggtatggttctgttaacccataagggt----ctggttactaac 41566194  T
Q  118 gtattggaatcgtccctcgatctgagttcttaagcgtatgtttgaacatcattgtgtttggtggcctgactgcttcgcctctctgatgtttccatgtcta 217  Q
    ||||| || || |||| ||||||||||||||| |||||||||||||   ||||||||||||| || ||||||||| | ||||||||||||| || ||||     
T  41566195 gtattagactcatcccacgatctgagttcttacgcgtatgtttgaattccattgtgtttggttgcttgactgctttgactctctgatgttttcaggtctg 41566294  T
Q  218 tttagacctgcaggtttcaagccagcatcttgtctggttacactctgctatttgatgctcgaaagagcttttttgctt 295  Q
    || ||  ||||||||||||||    | |||||| |   ||||||||| ||||| ||||||||||||||| || |||||    
T  41566295 ttgaggtctgcaggtttcaag---tcgtcttgtattcctacactctggtatttaatgctcgaaagagctgttatgctt 41566369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 312
Target Start/End: Complemental strand, 11954675 - 11954449
Alignment:
Q  71 aaagggtatggttctgttaacccgaaagggttgcgctaattaataacgtattggaatcgtccctcgatctgagttcttaagcgtatgtttgaacatcatt 170  Q
    ||||||| || ||| ||||||||||||||||    ||  ||| |||||||||||| || ||||| |||||||||||||| |||| ||||||||   | ||    
T  11954675 aaagggtgtgattccgttaacccgaaagggt----ctggttattaacgtattggactcatccctggatctgagttcttacgcgtctgtttgaattccgtt 11954580  T
Q  171 gtgtttggtggcctgactgcttcgcctctctgatgtttccatgtctatttagacctgcaggtttcaagccagcatcttgtctggttacactctgctattt 270  Q
    |||||||||| | |||||||||        ||||||||  | || | || | | |||||||||||||| |    || ||||||  |||||| || ||| |    
T  11954579 gtgtttggtgacatgactgctt--------tgatgtttttaggtatgttgaaatctgcaggtttcaagtct---tcgtgtctgcctacactttggtatat 11954491  T
Q  271 gatgctcgaaagagcttttttgcttactgctttgttcaggga 312  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  11954490 gatgctcgaaagagcttttatgcttgctgctttgttcaggga 11954449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 38731816 - 38731892
Alignment:
Q  132 cctcgatctgagttcttaagcgtatgtttgaacatcattgtgtttggtggcctgactgcttcgcctctctgatgttt 208  Q
    ||||||| |||||||||| |||| ||||||||    ||||||||||||||| ||||| ||||| |||| ||||||||    
T  38731816 cctcgatgtgagttcttacgcgtttgtttgaaaccaattgtgtttggtggcatgacttcttcgactctttgatgttt 38731892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 35740314 - 35740028
Alignment:
Q  19 ggtggttgaagacttttggcctctttttgatgtggtttgattt-aaaaacttgaaagggtatggttctgttaacccgaaagggttgcgctaattaataac 117  Q
    |||||||||||||||| |||||  |||||||||| |||| ||| ||||||  ||||||| |||||||||||| |||||||||||    |||  || ||||    
T  35740314 ggtggttgaagacttt-ggccttgttttgatgtgatttggtttcaaaaacccgaaagggaatggttctgttagcccgaaagggt----ctagctattaac 35740220  T
Q  118 gtattggaatcgtccctcgatctgagttcttaagcgtatgtttgaacatcattgtgtttggtggcctgactgcttcgcctctctgatgtttccatgtcta 217  Q
    |||||||| ||||||||||||||||||||||| || | |||| | |   | |||||||||||||||||| |||||||  || ||||||||| || ||||     
T  35740219 gtattggactcgtccctcgatctgagttcttatgcatctgttcgcattccgttgtgtttggtggcctgattgcttcgaatcactgatgttttcaggtctg 35740120  T
Q  218 tttagacctgcaggtttcaagccagcatcttgtctggttacactctgctatttgatgctcgaaagagcttttttgcttactgctttgttcaggga 312  Q
    || |||  ||||||||||||| |    ||  |||||  |||||| || |||||||||||||||||||||||| |||||  |||||||||||||||    
T  35740119 ttgagatttgcaggtttcaagtcg---tcgcgtctgcctacactttggtatttgatgctcgaaagagcttttatgcttgttgctttgttcaggga 35740028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 7903391 - 7903530
Alignment:
Q  21 tggttgaagacttttggcctctttttgatgtggtttgattt-aaaaacttgaaagggtatggttctgttaacccgaaagggttgcgctaattaataacgt 119  Q
    |||||||||||||||||||||||| |||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||    | |||| ||||||    
T  7903391 tggttgaagacttttggcctctttatgatgtggtttggtttcaaaaacttgaaaagatatggttctgttaacccgaaagggtt----tgattactaacgt 7903486  T
Q  120 attggaatcgtccctcgatctgagttcttaagcgtatgtttgaa 163  Q
    |||||  || | ||||||| |||||||||| || ||||||||||    
T  7903487 attggggtcattcctcgatttgagttcttacgcatatgtttgaa 7903530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 43335527 - 43335490
Alignment:
Q  64 aaacttgaaagggtatggttctgttaacccgaaagggt 101  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  43335527 aaactcgaaagggtatggttctgttaactcgaaagggt 43335490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 35260367 - 35260088
Alignment:
Q  20 gtggttgaagacttttggcctctttttgatgtggtttgatttaaaaacttgaaagggtatggttctgttaacccgaaagggttgcgctaattaataacgt 119  Q
    ||||||||||| |||||||||| ||||||||||||||| |||  |||| |||| ||||||||||||||||||| |||||||||    | | || |||| |    
T  35260367 gtggttgaagaattttggcctcgttttgatgtggtttggtttctaaacctgaaggggtatggttctgttaacctgaaagggtt----tgaatactaacat 35260272  T
Q  120 attggaatcgtccctcgatctgagttcttaagcgtatgtttgaa-catcattgtgtttggtggcctgactgcttcgcctctctgatgtttccatgtctat 218  Q
    |||||| || ||| ||||| |||||||||| ||||||||||||| |||  ||||||||| ||||| |||||||||   | |   |||||| || |||| |    
T  35260271 attggattcatccatcgatttgagttcttatgcgtatgtttgaatcat-gttgtgtttgatggcccgactgcttcaattgt---atgttttcaggtctgt 35260176  T
Q  219 ttagacctgcaggtttcaagccagcatcttgtctggttacactctgctatttgatgctcgaaagagcttttttgcttactgctttgttcagg 310  Q
    | ||| || |||||||| ||    |||||||||||  |||||| || |||||||||||||||||||||||| ||||| ||||||||||||||    
T  35260175 tgagatctccaggtttctag---tcatcttgtctgcctacactttg-tatttgatgctcgaaagagcttttatgcttgctgctttgttcagg 35260088  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 312
Target Start/End: Complemental strand, 38011766 - 38011505
Alignment:
Q  45 ttgatgtggtttgattta-aaaacttgaaagggtatggttctgttaacccgaaagggttgcgctaattaataacgtattggaatcgtccctcgatctgag 143  Q
    ||||||||||||| |||  |||||| | ||||||||||||||| ||||||| ||||||    ||  ||| |||||||||||| || |||||||||||||     
T  38011766 ttgatgtggtttggtttctaaaactcgtaagggtatggttctgataacccgcaagggt----ctggttactaacgtattggactcatccctcgatctgaa 38011671  T
Q  144 ttcttaagcgtatgtttgaacatcattgtgtttggtggcctgactgcttcgcctctctgatgtttccatgtctatttagacctgcaggtttcaagccagc 243  Q
    |||||| | ||| |||||||  |  |||||||||||| ||||| ||||| | |||||||||||||||| |||| || ||| ||||||||||||||         
T  38011670 ttcttacgtgtaggtttgaagctggttgtgtttggtgacctgattgcttagactctctgatgtttccaggtctgttgagatctgcaggtttcaag---tt 38011574  T
Q  244 atcttgtctggttacactctgctatttgatgctcgaaagagcttttttgcttactgctttgttcaggga 312  Q
     ||| ||  |  ||||||||| |||||| ||||||||||||||||| ||||| |||||| |||||||||    
T  38011573 gtctcgttcgcctacactctggtatttggtgctcgaaagagcttttatgcttgctgcttagttcaggga 38011505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 2815218 - 2815004
Alignment:
Q  20 gtggttgaagacttttggcctctttttgatgtggtttgatttaa-aaacttgaaagggtatggttctgttaacccgaaagggttgcgctaattaataacg 118  Q
    ||||| ||||||||||||||| |||| ||||||||||| ||| | ||||  || ||||||||||| ||||||| || ||||||    ||  ||| ||| |    
T  2815218 gtggtcgaagacttttggcctatttt-gatgtggtttggttttataaacccgagagggtatggttatgttaactcggaagggt----ctggttactaatg 2815124  T
Q  119 tattggaatcgtccctcgatctgagttcttaagcgtatgtttgaacatcattgtgtttggtggcctgactgcttcgcctctctgatgtttccatgtctat 218  Q
    ||||||| || |||  |||| |||||||||| |||||||||||||   | |||| |||||| || | ||||||||| |||||||||||||  | |||| |    
T  2815123 tattggactcatcctacgatatgagttcttacgcgtatgtttgaattccgttgtctttggttgcttaactgcttcgactctctgatgttttaaggtctgt 2815024  T
Q  219 ttagacctgcaggtttcaag 238  Q
    | ||  ||||||||||||||    
T  2815023 tgaggtctgcaggtttcaag 2815004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 29460012 - 29459972
Alignment:
Q  272 atgctcgaaagagcttttttgcttactgctttgttcaggga 312  Q
    ||||||||||||||| || ||||| ||||||||||||||||    
T  29460012 atgctcgaaagagctcttatgcttgctgctttgttcaggga 29459972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 62 - 208
Target Start/End: Original strand, 39228860 - 39229002
Alignment:
Q  62 aaaaacttgaaagggtatggttctgttaacccgaaagggttgcgctaattaataacgtattggaatcgtccctcgatctgagttcttaagcgtatgtttg 161  Q
    |||||| ||||||| ||||||||||||||||||||||| |    ||  ||| ||||||||| || || |||||||||||||||||||| |||| ||| ||    
T  39228860 aaaaacctgaaaggctatggttctgttaacccgaaaggtt----ctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtctgtctg 39228955  T
Q  162 aacatcattgtgtttggtggcctgactgcttcgcctctctgatgttt 208  Q
    ||  |  |||||||||||||  ||||| |||||  ||||||||||||    
T  39228956 aaactgcttgtgtttggtggtttgacttcttcgaatctctgatgttt 39229002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 12419577 - 12419502
Alignment:
Q  114 taacgtattggaatcgtccctcgatctgagttcttaagcgtatgtttgaacatcattgtgtttggtggcctgactg 189  Q
    |||||||||||| || ||||| |||||||||||||| |||||||||||||    ||||||||||||||| ||||||    
T  12419577 taacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtggcttgactg 12419502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 12431637 - 12431562
Alignment:
Q  114 taacgtattggaatcgtccctcgatctgagttcttaagcgtatgtttgaacatcattgtgtttggtggcctgactg 189  Q
    |||||||||||| || ||||| |||||||||||||| |||||||||||||    ||||||||||||||| ||||||    
T  12431637 taacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtggcttgactg 12431562  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 5136197 - 5136242
Alignment:
Q  114 taacgtattggaatcgtccctcgatctgagttcttaagcgtatgtt 159  Q
    |||||||||||| || |||||||||||||||||||| |||| ||||    
T  5136197 taacgtattggactcatccctcgatctgagttcttacgcgtctgtt 5136242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 14695008 - 14694956
Alignment:
Q  256 tacactctgctatttgatgctcgaaagagcttttttgcttactgctttgttca 308  Q
    ||||||||| || || |||||||||||||||||| |||||  |||||||||||    
T  14695008 tacactctggtaattcatgctcgaaagagcttttatgcttgttgctttgttca 14694956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 6257238 - 6257287
Alignment:
Q  114 taacgtattggaatcgtccctcgatctgagttcttaagcgtatgtttgaa 163  Q
    |||| ||||||| || |||||||||||||||||||| |||| ||||||||    
T  6257238 taacatattggactcatccctcgatctgagttcttacgcgtttgtttgaa 6257287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 19932415 - 19932375
Alignment:
Q  272 atgctcgaaagagcttttttgcttactgctttgttcaggga 312  Q
    |||||||||||||||||| ||||| |||| |||||||||||    
T  19932415 atgctcgaaagagcttttatgcttgctgcattgttcaggga 19932375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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