View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4763-Insertion-5 (Length: 693)
Name: NF4763-Insertion-5
Description: NF4763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4763-Insertion-5 |
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| [»] chr3 (4 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 67 - 693
Target Start/End: Complemental strand, 23023168 - 23022537
Alignment:
| Q |
67 |
ataaatacaagatgctaaccttttgcatt---ctgcaggtgttttgattttttaaacccatgaagaatttccacctacatcatttataaataattgattt |
163 |
Q |
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| T |
23023168 |
ataaatacaagatgttaaccttttgcattaatctgcaggtattttgattttttaa-cctatgaagaatttccacctacatcatttataaataattgattt |
23023070 |
T |
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| Q |
164 |
atttattcatgccctttttgtaaattattcacaatgtcatgttaatatgnnnnnnnnnnnnnnnnntgggttaaacttttattcataatttcactatcta |
263 |
Q |
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| T |
23023069 |
atttagtcatgccctttttgtaaagtattcacaatgtcatgttactatgaaaaacaaaaaataaaatgggttaaacttttattcattatttcactatcta |
23022970 |
T |
|
| Q |
264 |
tggtttaaggaaacaaataaaaaatagattaatcatgtaacnnnnnnnc---ccttgagagtaacttcaaaagcattatgtttctcaattcataagttgc |
360 |
Q |
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| T |
23022969 |
tggtttaaggaaacaaataaaaaatagattaatcatgtaactttttttttttccttgagagtaacttcaaaagcattatgtttctcaattcataagttgc |
23022870 |
T |
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| Q |
361 |
ttctcgagcaataactataagtatgagggagaaaaataggttggtaatacaatccctctttttacattatgctttcttataagattttcaacacaaggtt |
460 |
Q |
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| T |
23022869 |
ttctcaagcaataactataagtatgagggagaaaaataggttagtaatacaatccctctttttacattatgctttcttataagattttcaacacaaggtt |
23022770 |
T |
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| Q |
461 |
ttgtacttgatctatctttgcactgtaccttatttatcatattctgatcacattcaaaaagctctgattatatatatcaataaattgctgattttnnnnn |
560 |
Q |
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| T |
23022769 |
ttgtacttgatctatctttgcactgtaccttatttatcatattctgatcacattcaaaaggctctgattatatatatcaataaattactgatttaaaaaa |
23022670 |
T |
|
| Q |
561 |
nnttcagatattaagattatatttacatccaatgttgtaattgtgtcaagatgcgatcccagcatttactgctagataaactataattttctactatttt |
660 |
Q |
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| T |
23022669 |
aattcagatattaagattatatttacatccaatgttgtaattgtgtcaagatgcgatcccagcattaactgctagataaactataattttctactatttt |
23022570 |
T |
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| Q |
661 |
ttgtacctcttttatcatttcctttttaccact |
693 |
Q |
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| T |
23022569 |
ttgtacctcttttatcatttcctttttaccact |
23022537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 426 - 521
Target Start/End: Complemental strand, 23032013 - 23031918
Alignment:
| Q |
426 |
attatgctttcttataagattttcaacacaaggttttgtacttgatctatctttgcactgtaccttatttatcatattctgatcacattcaaaaag |
521 |
Q |
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| T |
23032013 |
attatgctttcttataatattttcaaaaaaaggctttcgatgcgatctatctttgaactgtattttatttatcatgttttgatcatattcaaaaag |
23031918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 495
Target Start/End: Complemental strand, 23145353 - 23145275
Alignment:
| Q |
417 |
tctttttacattatgctttcttataagattttcaacacaaggttttgtacttgatctatctttgcactgtaccttattt |
495 |
Q |
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| T |
23145353 |
tctttttgcataatgctttctaataagattttcaacacaaggcttcggactaaatctatctttaaatcgtaccttattt |
23145275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 23145467 - 23145423
Alignment:
| Q |
7 |
atctacacccttaagccctattacaaaggattgaaacttaccttt |
51 |
Q |
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| T |
23145467 |
atctacatccttaagccctattataagggattgaaatttaccttt |
23145423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 597 - 693
Target Start/End: Complemental strand, 21779291 - 21779198
Alignment:
| Q |
597 |
gtaattgtgtcaagatgcgatcccagcatttactgctagataaactataattttctactattttttgtacctcttttatcatttcctttttaccact |
693 |
Q |
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||||||| ||||||||| ||||| |||||| ||| | |||||||||||||||||||| |||| |||||||||||||| ||| |||||||||||| |
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| T |
21779291 |
gtaattgagtcaagatgtgatccaagcatt--ctgaccgttaaactataattttctactactttt-gtacctcttttatcgttttctttttaccact |
21779198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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