View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4763-Insertion-6 (Length: 665)
Name: NF4763-Insertion-6
Description: NF4763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4763-Insertion-6 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 635; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 8 - 665
Target Start/End: Complemental strand, 43832336 - 43831678
Alignment:
| Q |
8 |
tactctataccagctatttgacaataaaacaaattcacatgaaatacaaacattgaatcaagtaaccaacaaaaacccaaggaataattaatataacata |
107 |
Q |
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| T |
43832336 |
tactctataccagctatttgacaataaaacaaattcacatgaaatacaaacattgaatcaagtaaccaacaaaaacccaaggaataattaatataacata |
43832237 |
T |
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| Q |
108 |
aaccatgaataattggacaaatatagcaaccactctgaaagagcaaataacaaatcagaaggcacggttttctgataagcaaacttccaaccaacagcaa |
207 |
Q |
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| T |
43832236 |
aaccatgaataattggacaaatatagcaaccactctgaaagagcaaataacaaatcagaaggcacagttttctgataggcaaacttccaaccaacagcaa |
43832137 |
T |
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| Q |
208 |
tcaactcaccactcagcaacattccacatttcatattgcgtaagtgtttatgcataagttgttcaaagaaaaatttcacataaccgctacataaacgttt |
307 |
Q |
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| T |
43832136 |
tcaactcaccactcagcaacattccacatttcatattgcgtaagtgtttatgcataagttgttcaaagaaaaatttcacataaccgctacataaacgttt |
43832037 |
T |
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| Q |
308 |
atgcttttatatcataagctctttcaaacaccacactgttacgcaagtgcttagatagttagatcat-aaagtataggataaaccgatttaagctctttg |
406 |
Q |
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| T |
43832036 |
atgcttttatatcataagctctttcaatcaccacactgttacgcaagtgcttagatagttagatcataaaagtataggataaaccgatttaagctctttg |
43831937 |
T |
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| Q |
407 |
aaatgtgcttaaagtgcattggtcaatctgctatttggctgtgagccacaagaatacatgaaatgcaaaatacacaatcactctaaaaatgtgcatgcta |
506 |
Q |
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| T |
43831936 |
aaatgtgcttaaagtgcattggtcaatctgctatttggctgtgagccacaagaatacatgaaatgcaaaatacacaatcactctaaaaatgtgcatgcta |
43831837 |
T |
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| Q |
507 |
cttgtacgaccaagactgaacaagtgatagcaaaacagcagatgtctaatatttccaacctaaaaaacctgacactaaattattggattagcactaatta |
606 |
Q |
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| T |
43831836 |
cttgtacgaccaagactgaacaagtgatagcaaaacagcagatgtctaatattttcaacctaaaaaacctgacactaaattattggattagcactaatta |
43831737 |
T |
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| Q |
607 |
ctctatgaagaggatatgagtagcatttgaactttgaagtgctttcctacattagttaa |
665 |
Q |
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| T |
43831736 |
ctctatgaagaggatatgagtagcatttgaactttgaagtgctttcctacattagttaa |
43831678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 363
Target Start/End: Complemental strand, 43826896 - 43826784
Alignment:
| Q |
248 |
taagtgtttatgcataagttgttcaaagaaaaatttcacataaccgctacataaacgtttatgcttttatatcataagctctttcaaacaccacactgtt |
347 |
Q |
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| T |
43826896 |
taagtgtttatgtataagttgttcgaagaaaaatttcacataacctctacatttacgtttattc-ttgataccataagctctttcaagca-cac-ctgtt |
43826800 |
T |
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| Q |
348 |
acgcaagtgcttagat |
363 |
Q |
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| T |
43826799 |
acacaagtgtttagat |
43826784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 550
Target Start/End: Complemental strand, 43826712 - 43826603
Alignment:
| Q |
440 |
tttggctgtgagccacaagaatacatgaaatgcaaaatacacaatcactctaaaaatgtgcatgctacttgtacgaccaagactgaacaagtgatagcaa |
539 |
Q |
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|||||||||| |||| ||||||| ||||||| ||||| ||| |||||||||||| || || |||||||||||||||||||| || | ||| |||||| |
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| T |
43826712 |
tttggctgtgggccataagaatatatgaaat-caaaaaacagctgcactctaaaaatatgtatactacttgtacgaccaagacttaaaacgtgctagcaa |
43826614 |
T |
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| Q |
540 |
aacagcagatg |
550 |
Q |
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| T |
43826613 |
aataacagatg |
43826603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 43833397 - 43833317
Alignment:
| Q |
249 |
aagtgtttatgcataagttgttcaaagaaaaatttcacataaccgc-tacataaacgtttatgcttttatatcataagctctttc |
332 |
Q |
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| T |
43833397 |
aagtgtttatgcataagtt---caaagaaaaatttcacataacctcttgcataaacgtttatac-tttgtattataagctctttc |
43833317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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