View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4763-Insertion-7 (Length: 637)
Name: NF4763-Insertion-7
Description: NF4763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4763-Insertion-7 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 308 - 637
Target Start/End: Original strand, 41324961 - 41325290
Alignment:
| Q |
308 |
gtcaagtagtctactgactggcactcacacatttcagatgtgaagaagtggggagtctaagttcgaactccgacccctaaaaatatgttttgaaattgga |
407 |
Q |
| |
|
||||||||||||||| || || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41324961 |
gtcaagtagtctactaaccggtactcacacattttagatgtgaagaagtggggagtctaagttcgaactccgacccctaaaaatatgttttgaaattgga |
41325060 |
T |
|
| Q |
408 |
agacactaactaattaattaccacaatggtgagacccctaaatgcatcaagtgtagcaaccctctttgtcttttgcttaaccagttcaggctgctgatcc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41325061 |
agacactaactaattaattaccacaatggtgagacccctaaatgcatcaagtgtagcaaccctctttgtcttttgcttaaccagttcaggctgctgatcc |
41325160 |
T |
|
| Q |
508 |
acaggtttagccattgtgtatgtgccatgctgatcaatatttgaatctacaatattaatggtttcttgctccttcaactcatctttagcatcttcatgat |
607 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41325161 |
acaggcttagccattgtgtatgtgccatgctgatcaacatttgaatctacaatattaatggtttcttgctccttcaactcatctttagcatcttcatgat |
41325260 |
T |
|
| Q |
608 |
ccaattgtaatttgaggccttcttccattc |
637 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41325261 |
ccaattgtaatttgaggccttcttccattc |
41325290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 41324658 - 41324929
Alignment:
| Q |
7 |
agggctatggcaacaccaacaatgaaaagaaagaaaggcattacaaaatcagccaaagtacatccatcccacggggcatgatcaatgcgtggataagctc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41324658 |
agggctatggcaacaccaacaatgaaaagaaagaaaggcattacaaaatcagccaaagtacatccatcccacggggcatgatcaatgcgtggataagctc |
41324757 |
T |
|
| Q |
107 |
caccagctttgtctaccagtatcattatctacacataaatatagtagcagcccaaaaaacaccatataggtttttctttaaggaaccatattgattaatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41324758 |
caccagctttgtctaccagtatcattatctacacataaatatagtagcagcccaaaaaacaccatataggtttttctttaaggaaccatattgattaatt |
41324857 |
T |
|
| Q |
207 |
aattcaagtaaagga----atattttagacgattaatttatttaaattgcaaacatttgtattttgtaccac |
274 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41324858 |
aattcaagtaaaggaatatatattttagacgattaatttatttaaattgcaaacatttgtattttgtaccac |
41324929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 41309970 - 41310091
Alignment:
| Q |
10 |
gctatggcaacaccaacaatgaaaagaaagaaaggcattacaaaatcagccaaagtacatccatcccacggggcatgatcaatgcgtggataagctccac |
109 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| || | ||||||||||||| ||||||||||| |
|
|
| T |
41309970 |
gctatggccacaccaacgatgaaaagaaagaaaggcataacaaaatcagccaaagtacatccattccatggagagtgatcaatgcgtgaataagctccac |
41310069 |
T |
|
| Q |
110 |
cagctttgtctaccagtatcat |
131 |
Q |
| |
|
|||| | ||| |||| |||||| |
|
|
| T |
41310070 |
cagcatcgtccaccaatatcat |
41310091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 427 - 488
Target Start/End: Original strand, 41310317 - 41310378
Alignment:
| Q |
427 |
accacaatggtgagacccctaaatgcatcaagtgtagcaaccctctttgtcttttgcttaac |
488 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
41310317 |
accacaatggtgaggcccctaaatgcatcaagtgttgcaacccgttttgtcttttgcttaac |
41310378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 27656541 - 27656440
Alignment:
| Q |
10 |
gctatggcaacaccaacaatgaaaagaaagaaaggcattacaaaatcagccaaagtacatccatcccacggggcatgatcaatgcgtggataagctccac |
109 |
Q |
| |
|
||||| ||||| |||||||||||||| || |||||||| || ||||||||||| |||||||||| ||| || | |||||||| || ||||||||||||| |
|
|
| T |
27656541 |
gctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgatcaattcgaggataagctccac |
27656442 |
T |
|
| Q |
110 |
ca |
111 |
Q |
| |
|
|| |
|
|
| T |
27656441 |
ca |
27656440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University