View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4763-Insertion-8 (Length: 604)

Name: NF4763-Insertion-8
Description: NF4763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4763-Insertion-8
NF4763-Insertion-8
[»] chr5 (27 HSPs)
chr5 (136-604)||(15406046-15406514)
chr5 (8-88)||(15405966-15406046)
chr5 (43-111)||(17258872-17258940)
chr5 (10-92)||(3977340-3977422)
chr5 (44-110)||(13605363-13605429)
chr5 (33-111)||(17368689-17368767)
chr5 (31-88)||(6587084-6587141)
chr5 (42-91)||(14331400-14331449)
chr5 (43-91)||(3280703-3280751)
chr5 (43-111)||(37611204-37611272)
chr5 (43-111)||(37787934-37788002)
chr5 (20-111)||(2568671-2568762)
chr5 (48-111)||(2569689-2569752)
chr5 (44-91)||(11700368-11700415)
chr5 (33-111)||(11707068-11707146)
chr5 (45-91)||(12467166-12467212)
chr5 (50-111)||(985626-985687)
chr5 (42-91)||(1899187-1899236)
chr5 (49-110)||(12521542-12521603)
chr5 (44-85)||(12595706-12595747)
chr5 (50-91)||(25461312-25461353)
chr5 (44-91)||(9202737-9202785)
chr5 (43-111)||(13604838-13604906)
chr5 (33-88)||(16457957-16458013)
chr5 (43-111)||(21768186-21768254)
chr5 (33-77)||(39248146-39248190)
chr5 (31-91)||(41957428-41957488)
[»] chr3 (20 HSPs)
chr3 (8-111)||(45541584-45541687)
chr3 (32-91)||(39723218-39723277)
chr3 (43-105)||(36101587-36101649)
chr3 (43-105)||(36139897-36139959)
chr3 (43-91)||(5391912-5391960)
chr3 (43-111)||(16790368-16790435)
chr3 (44-91)||(3044249-3044296)
chr3 (43-90)||(5166357-5166404)
chr3 (44-91)||(5396230-5396277)
chr3 (33-111)||(21367680-21367759)
chr3 (43-86)||(53762383-53762426)
chr3 (33-91)||(24785294-24785352)
chr3 (33-91)||(36887537-36887595)
chr3 (33-91)||(50952366-50952424)
chr3 (33-91)||(53952081-53952139)
chr3 (50-91)||(25925775-25925816)
chr3 (44-109)||(42745053-42745118)
chr3 (43-91)||(34954115-34954162)
chr3 (43-75)||(39723389-39723421)
chr3 (43-111)||(54837023-54837091)
[»] chr7 (16 HSPs)
chr7 (32-91)||(43219622-43219681)
chr7 (32-91)||(11048060-11048119)
chr7 (8-88)||(9038148-9038227)
chr7 (32-92)||(15740389-15740449)
chr7 (43-91)||(43250688-43250736)
chr7 (48-91)||(6552286-6552329)
chr7 (44-111)||(18749807-18749874)
chr7 (8-91)||(20553136-20553219)
chr7 (8-90)||(30535597-30535679)
chr7 (43-88)||(425813-425858)
chr7 (43-88)||(25130078-25130123)
chr7 (44-85)||(36598346-36598387)
chr7 (43-111)||(12110373-12110441)
chr7 (59-111)||(36517592-36517644)
chr7 (43-75)||(43219793-43219825)
chr7 (51-111)||(44151477-44151537)
[»] chr6 (16 HSPs)
chr6 (32-91)||(696635-696694)
chr6 (33-91)||(10616692-10616750)
chr6 (31-92)||(31624122-31624183)
chr6 (48-108)||(13908479-13908539)
chr6 (8-77)||(769185-769254)
chr6 (45-110)||(10657252-10657317)
chr6 (32-92)||(1575927-1575987)
chr6 (43-91)||(28641738-28641786)
chr6 (51-90)||(821833-821872)
chr6 (48-111)||(27894059-27894122)
chr6 (51-109)||(4420658-4420716)
chr6 (48-85)||(821464-821501)
chr6 (33-89)||(103466-103522)
chr6 (43-75)||(696491-696523)
chr6 (32-91)||(23272019-23272076)
chr6 (43-111)||(33887843-33887911)
[»] chr1 (34 HSPs)
chr1 (33-110)||(28689431-28689508)
chr1 (43-91)||(6292526-6292574)
chr1 (8-91)||(31517694-31517777)
chr1 (13-111)||(7262477-7262575)
chr1 (14-91)||(11639376-11639453)
chr1 (34-111)||(35925703-35925780)
chr1 (50-111)||(37593680-37593741)
chr1 (26-111)||(37842327-37842412)
chr1 (43-91)||(37431775-37431823)
chr1 (31-89)||(1565512-1565570)
chr1 (43-105)||(10854752-10854814)
chr1 (50-111)||(46252678-46252739)
chr1 (19-91)||(2777925-2777997)
chr1 (43-91)||(5591955-5592003)
chr1 (43-91)||(10199397-10199445)
chr1 (43-111)||(34290249-34290317)
chr1 (44-91)||(26184781-26184828)
chr1 (44-91)||(30815643-30815690)
chr1 (44-111)||(43420271-43420338)
chr1 (44-110)||(27140492-27140558)
chr1 (50-91)||(1509961-1510002)
chr1 (44-77)||(4549714-4549747)
chr1 (30-91)||(43338149-43338210)
chr1 (43-87)||(4202140-4202184)
chr1 (43-91)||(10744334-10744382)
chr1 (44-96)||(11695889-11695941)
chr1 (51-91)||(21002193-21002233)
chr1 (8-84)||(28836999-28837075)
chr1 (51-91)||(37416838-37416878)
chr1 (32-91)||(37517143-37517203)
chr1 (33-77)||(37811899-37811943)
chr1 (43-87)||(38170679-38170723)
chr1 (31-87)||(42757154-42757210)
chr1 (43-111)||(43332497-43332565)
[»] chr8 (19 HSPs)
chr8 (30-85)||(3254264-3254319)
chr8 (49-110)||(20672764-20672825)
chr8 (33-85)||(926514-926566)
chr8 (44-111)||(11569447-11569514)
chr8 (33-111)||(2458545-2458623)
chr8 (44-110)||(39866724-39866790)
chr8 (27-91)||(13459678-13459742)
chr8 (43-91)||(42215295-42215343)
chr8 (44-91)||(9835890-9835937)
chr8 (8-111)||(14949879-14949982)
chr8 (32-86)||(779039-779093)
chr8 (38-91)||(2594981-2595034)
chr8 (34-91)||(10383918-10383975)
chr8 (44-96)||(5069725-5069777)
chr8 (43-91)||(12851209-12851257)
chr8 (43-91)||(30389132-30389180)
chr8 (44-91)||(31751546-31751594)
chr8 (51-91)||(34849136-34849176)
chr8 (43-91)||(41606892-41606940)
[»] chr4 (12 HSPs)
chr4 (44-111)||(21043225-21043292)
chr4 (9-91)||(1137745-1137827)
chr4 (8-111)||(18011884-18011987)
chr4 (44-111)||(52746830-52746897)
chr4 (16-67)||(22573216-22573267)
chr4 (43-111)||(47800636-47800701)
chr4 (31-91)||(13126552-13126613)
chr4 (43-91)||(22236094-22236142)
chr4 (43-111)||(23819102-23819170)
chr4 (43-111)||(28300288-28300356)
chr4 (51-91)||(48719388-48719428)
chr4 (35-87)||(56249561-56249613)
[»] chr2 (21 HSPs)
chr2 (8-78)||(5902503-5902573)
chr2 (30-91)||(1647269-1647330)
chr2 (43-91)||(43529847-43529895)
chr2 (8-111)||(3067333-3067436)
chr2 (43-111)||(680516-680584)
chr2 (43-111)||(35379005-35379073)
chr2 (48-91)||(12147490-12147533)
chr2 (8-91)||(14666581-14666664)
chr2 (33-111)||(26626886-26626965)
chr2 (44-111)||(32821822-32821889)
chr2 (43-90)||(33256774-33256821)
chr2 (33-83)||(787373-787423)
chr2 (33-91)||(29316754-29316812)
chr2 (43-85)||(44438828-44438870)
chr2 (43-92)||(33580536-33580585)
chr2 (33-110)||(35485931-35486008)
chr2 (50-111)||(43635097-43635158)
chr2 (33-69)||(1801723-1801759)
chr2 (43-111)||(12313162-12313230)
chr2 (31-111)||(33192215-33192295)
chr2 (31-91)||(44606087-44606147)
[»] scaffold0004 (1 HSPs)
scaffold0004 (32-77)||(98618-98663)


Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 136 - 604
Target Start/End: Original strand, 15406046 - 15406514
Alignment:
Q  136 aaatagtttgactttattactttttgttaagtgaaaataactaataaataagtacttatatgttnnnnnnnttgttcaaaatttaggaatataattcatt 235  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  15406046 aaatagtttgactttattactttttgttaagtgaaaatagctaataaataagtacttatatgttaaaaaaattgttcaaaatttaggaatataattcatt 15406145  T
Q  236 tggctatgatcatttcatgttctttgaaatttatgaccaagtgcaaatgctttgacaaggaaaacaataattgaaatttcatgtcatattggtatcaata 335  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15406146 tggctatgatcatttcatgttctttgaaatttatgaccaagtgccaatgctttgacaaggaaaacaataattgaaatttcatgtcatattggtatcaata 15406245  T
Q  336 tgaaataaatccactaagattcagcccttatagaacatgtgccatgtgatgtgagatttggtagatagataaaagtccttaatagattcactactaagaa 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15406246 tgaaataaatccactaagattcagcccttatagaacatgtgccatgtgatgtgagatttggtagatagataaaagtctttaatagattcactactaagaa 15406345  T
Q  436 agattaaaaaatcacttcatactataatactaatcatggaagggttnnnnnnnnnnnnnnnnnnnnngactatagatatattagaatatgagatatacct 535  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||                     |||||||||||||||||||||||||||||||||    
T  15406346 agattaaaaaatcacttcatactataatattaatcatggaagggttgaaaaaagaaagaaagaaaaggactatagatatattagaatatgagatatacct 15406445  T
Q  536 gatatgtctttccttggtcagattcttctcctttctctgtctcacaacctgaaccttccttttctacct 604  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15406446 gatatgtctttccttggtcagattcttctcctttctttgtctcacaacctgaaccttccttttctacct 15406514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 15405966 - 15406046
Alignment:
Q  8 ataaacacttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttca 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  15405966 ataaacacttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagctgttttcaatttattttca 15406046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 17258872 - 17258940
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||| |||||||||||||||||||||| |||||||| |||||||||||| || |||| ||||| |||||    
T  17258872 aaaatagcttatgacatgttcataagctgttttcagcttattttcataagctcttcaggatagtttatg 17258940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 3977422 - 3977340
Alignment:
Q  10 aaacacttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataat 92  Q
    |||||||| |||||  ||| |||| ||||||  ||||||||||||||||||||| | ||| || ||||| |||||||||||||    
T  3977422 aaacacttgtgagattgtttagaaaaacttatgaaaacagcttatgacatgttccttagctgtcttcagcttattttcataat 3977340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 13605363 - 13605429
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttat 110  Q
    ||||||||||||| |||| |||||   ||||||||||||||||||||| |||| || ||||||||||    
T  13605363 aaacagcttatgaaatgtacataaattgttttcagtttattttcataagctttccaggatagcttat 13605429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 17368767 - 17368689
Alignment:
Q  33 agaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||||||  |||||| ||||||||||||||||| || |||||||| |||||| ||||| || | || |||||||||||    
T  17368767 agaacttatgaaaacaacttatgacatgttcatatgcagttttcagcttatttccataacctctccaagatagcttatg 17368689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 6587084 - 6587141
Alignment:
Q  31 gaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttca 88  Q
    ||||||||||  |||||||||||||||| |||||||||| |||| ||| |||||||||    
T  6587084 gaagaacttaaaaaaacagcttatgacaggttcataagctgtttacagcttattttca 6587141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 14331449 - 14331400
Alignment:
Q  42 caaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||||||||||| ||||||| | |||||| ||||||||||||    
T  14331449 caaaacagcttatgacatgtccataagctgatttcagcttattttcataa 14331400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 3280703 - 3280751
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||||||||||| |||||||||  |||| |||||||||||||||    
T  3280703 aaaacagcttatgacatcttcataagctctttttagtttattttcataa 3280751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 37611204 - 37611272
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||| ||| |||||||||||||||| |||||||| |||||| ||||| || | || |||||||||||    
T  37611204 aaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatg 37611272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 37787934 - 37788002
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||| ||| |||||||||||||||| |||||||| |||||| ||||| || | || |||||||||||    
T  37787934 aaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatg 37788002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 2568762 - 2568671
Alignment:
Q  20 gagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||| ||| |||||||||||  ||||||||||||||||| ||||||||   |||| || |||||||||| | || | || |||||||||||    
T  2568762 gagactgtttagaagaacttatgaaaacagcttatgacatattcataagttatttttagcttattttcattagctctccatgatagcttatg 2568671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 2569689 - 2569752
Alignment:
Q  48 agcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||||||||||| ||||||| ||||| ||||||| ||||||| ||||| | ||||| |||||    
T  2569689 agcttatgacatgtccataagctgttttaagtttatattcataagctttttatgatagtttatg 2569752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 11700368 - 11700415
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||| |||||||||||| ||||||| |||||||| ||||||||||||    
T  11700368 aaacaacttatgacatgtccataagctgttttcagattattttcataa 11700415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 11707146 - 11707068
Alignment:
Q  33 agaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||||| ||||| || |||||||||||| |||||  |||||||| ||||||||| || || | || |||||||||||    
T  11707146 agaacttatcaaaatagattatgacatgtttataagttgttttcagcttattttcaaaagctctacaagatagcttatg 11707068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 12467212 - 12467166
Alignment:
Q  45 aacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||| ||||||||||||| |||||| |||||||| ||||||||||||    
T  12467212 aacaacttatgacatgtttataagctgttttcagcttattttcataa 12467166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 985687 - 985626
Alignment:
Q  50 cttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||||||||| || |||| |||||||| |||||| |||| ||| |||| |||||||||||    
T  985687 cttatgacatgtccacaagcggttttcagcttatttccatagtctcttcatgatagcttatg 985626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 1899236 - 1899187
Alignment:
Q  42 caaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||||||||||| ||||||  |||||||| |||||| |||||    
T  1899236 caaaacagcttatgacatgtgcataagttgttttcagcttatttccataa 1899187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 12521603 - 12521542
Alignment:
Q  49 gcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttat 110  Q
    |||||||| |||||||||||| |||||||| |||||| ||||| || ||||  |||||||||    
T  12521603 gcttatgatatgttcataagctgttttcagcttatttccataagctcttcaaaatagcttat 12521542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 12595706 - 12595747
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattt 85  Q
    |||||||||||  |||||||||||||||||||||| ||||||    
T  12595706 aaacagcttattgcatgttcataagccgttttcagcttattt 12595747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 25461312 - 25461353
Alignment:
Q  50 cttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||||||| ||| |||||||| ||||||||||||    
T  25461312 cttatgacatgttcattagctgttttcagcttattttcataa 25461353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 9202737 - 9202785
Alignment:
Q  44 aaacagcttatgacat-gttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||||||| |||||||||| |||| ||| ||||||||||||    
T  9202737 aaacagcttatgacattgttcataagctgtttccagcttattttcataa 9202785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 13604838 - 13604906
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||||||||||||||||| |||| |  |||||||  |||||||||||| || |||| |||| ||||||    
T  13604838 aaaacagcttatgacatgtccatacgttgttttcaacttattttcataagctcttcaagataacttatg 13604906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 16457957 - 16458013
Alignment:
Q  33 agaacttaccaaaacagcttatgaca-tgttcataagccgttttcagtttattttca 88  Q
    ||||||||  |||||||||||||||| | |||||||||  |||||||||||||||||    
T  16457957 agaacttatgaaaacagcttatgacagttttcataagctcttttcagtttattttca 16458013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 21768186 - 21768254
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||||||||||||||||| |||| || |||||||  |||||||| ||| || |||| |||| ||||||    
T  21768186 aaaacagcttatgacatgtccatacgctgttttcaacttattttcgtaagctcttcaagataacttatg 21768254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 39248190 - 39248146
Alignment:
Q  33 agaacttaccaaaacagcttatgacatgttcataagccgttttca 77  Q
    ||||||||  ||||||||||||||| ||||||||||| |||||||    
T  39248190 agaacttataaaaacagcttatgacttgttcataagctgttttca 39248146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 41957428 - 41957488
Alignment:
Q  31 gaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||| |||||  |||||||||||||||||| ||||||  |||||||  ||||||||||||    
T  41957428 gaagagcttacggaaacagcttatgacatgtccataagttgttttcatcttattttcataa 41957488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 45541687 - 45541584
Alignment:
Q  8 ataaacacttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagct 107  Q
    |||||||||| | |||| ||| |||||||||||  ||||||||||||||||||||||||||| |||||||| ||||| ||||||  | | || |||||||    
T  45541687 ataaacacttgtaagactgtttagaagaacttatgaaaacagcttatgacatgttcataagctgttttcaggttattctcataagttatccaagatagct 45541588  T
Q  108 tatg 111  Q
    ||||    
T  45541587 tatg 45541584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 39723218 - 39723277
Alignment:
Q  32 aagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  39723218 aagaacttatcaaaacagcttatgacatgttcataagctgttttcagcttattctcataa 39723277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 36101649 - 36101587
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatag 105  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||||| || |||| |||||    
T  36101649 aaaacagcttatgacatgttcacaagctgttttcagcttattttcataagctcttcaggatag 36101587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 36139959 - 36139897
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatag 105  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||||| || |||| |||||    
T  36139959 aaaacagcttatgacatgttcacaagctgttttcagcttattttcataagctcttcaagatag 36139897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 5391960 - 5391912
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||||||||||||||||||||| |||||||  ||||||||||||    
T  5391960 aaaacagcttatgacatgttcataagctgttttcaacttattttcataa 5391912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 16790368 - 16790435
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||| ||||||||||| || ||||||| ||||||||||||||||||||| || | || |||||||||||    
T  16790368 aaaatagcttatgaca-gtccataagctgttttcagtttattttcataagctatccaagatagcttatg 16790435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 3044249 - 3044296
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||| |||||||||||||||||||| |||||||  ||||||||||||    
T  3044249 aaacaacttatgacatgttcataagctgttttcaacttattttcataa 3044296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 5166404 - 5166357
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcata 90  Q
    |||||||| |||||||||||||||||| |||||||  |||||||||||    
T  5166404 aaaacagcatatgacatgttcataagctgttttcatcttattttcata 5166357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 5396277 - 5396230
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||||||||||||| |||||  |||||||| ||||||||||||    
T  5396277 aaacagcttatgacatgttaataaggtgttttcagcttattttcataa 5396230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 21367759 - 21367680
Alignment:
Q  33 agaacttaccaaaacagcttatgacat-gttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||||||  ||||||||||||||||| ||||| |||| |||||||| ||||||||||||  | | || |||||||||||    
T  21367759 agaacttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataagttctccaagatagcttatg 21367680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 53762383 - 53762426
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttatttt 86  Q
    ||||||||||||||||||||||||||| |||||||  |||||||    
T  53762383 aaaacagcttatgacatgttcataagctgttttcaacttatttt 53762426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 24785352 - 24785294
Alignment:
Q  33 agaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||| |||||| |||| ||||| ||||||||  ||||| |||||||||||||||    
T  24785352 agaacttacaaaaacatcttaggacattttcataagttgtttttagtttattttcataa 24785294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 36887595 - 36887537
Alignment:
Q  33 agaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||| ||||| | ||| |||||||||||||||  |||||||| ||||||||||||    
T  36887595 agaacttatcaaaagaacttttgacatgttcataagatgttttcagcttattttcataa 36887537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 50952424 - 50952366
Alignment:
Q  33 agaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||| ||| ||||||||||||||||||||||||| | ||||| || |||||| |||||    
T  50952424 agaacgtacgaaaacagcttatgacatgttcataaactgttttaagcttatttccataa 50952366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 53952139 - 53952081
Alignment:
Q  33 agaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||  ||||||||| || |||||||||| ||| |||||||| ||||||||||||    
T  53952139 agaacttatgaaaacagctgataacatgttcatgagctgttttcagcttattttcataa 53952081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 25925816 - 25925775
Alignment:
Q  50 cttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||||||||||| |||||||  ||||||||||||    
T  25925816 cttatgacatgttcataagctgttttcaacttattttcataa 25925775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 42745118 - 42745053
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagctta 109  Q
    ||||| |||||||||||||||||||  |||||||  |||||| ||||| ||||| | |||||||||    
T  42745118 aaacaacttatgacatgttcataagttgttttcatcttatttccataagcttttgaagatagctta 42745053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 34954162 - 34954115
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||| ||||||||||||| ||| |||||||| ||||||||||||    
T  34954162 aaaacagct-atgacatgttcatgagctgttttcagcttattttcataa 34954115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 39723389 - 39723421
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgtttt 75  Q
    ||||||||||||||||||||||||||| |||||    
T  39723389 aaaacagcttatgacatgttcataagctgtttt 39723421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 54837023 - 54837091
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||||||||||||||||||||||   |||||| | ||||||| |||| || | || |||||||||||    
T  54837023 aaaacagcttatgacatgttcataacttgttttccgcttatttttataagctgtccaagatagcttatg 54837091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 43219622 - 43219681
Alignment:
Q  32 aagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  43219622 aagaacttatcaaaacagcttatgacatgttcataagctgttttcagcttattctcataa 43219681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 11048119 - 11048060
Alignment:
Q  32 aagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||| ||||||| |||||||||||||||||||| |||||||| ||||| ||||||    
T  11048119 aagaacttatcaaaacaacttatgacatgttcataagctgttttcagcttattctcataa 11048060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 9038227 - 9038148
Alignment:
Q  8 ataaacacttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttca 88  Q
    |||| ||||| |||||  |||||||||||||||  |||||||||||||||||||||||||   |||||||| |||||||||    
T  9038227 ataagcacttatgagaatgttcagaagaacttataaaaacagcttatgacatgttcataa-ttgttttcagcttattttca 9038148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 15740389 - 15740449
Alignment:
Q  32 aagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataat 92  Q
    |||||||||  |||||| |||||||||||||||||||| ||||| |  |||||||||||||    
T  15740389 aagaacttatgaaaacaacttatgacatgttcataagctgtttttaacttattttcataat 15740449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 43250688 - 43250736
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||||||||||||||| ||||  ||||||||||||| |||||||    
T  43250688 aaaacagcttatgacatgttcgtaagttgttttcagtttatattcataa 43250736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 6552286 - 6552329
Alignment:
Q  48 agcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||| ||||||||| |||||||| ||||||||||||    
T  6552286 agcttatgacatattcataagctgttttcagcttattttcataa 6552329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 18749807 - 18749874
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||||||| ||||||||||||||| |||||||| |||||| |||||  ||| |  |||||||||||    
T  18749807 aaacagcttacgacatgttcataagcagttttcagcttatttccataagttttccgtgatagcttatg 18749874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 20553219 - 20553136
Alignment:
Q  8 ataaacacttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||| ||||| |||||| |||||| ||| ||||   |||||||||| ||||||||||||||  |||||||| |||||| |||||    
T  20553219 ataagcacttgtgagactgttcaggagagcttatggaaacagcttacgacatgttcataagttgttttcagattatttccataa 20553136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 30535679 - 30535597
Alignment:
Q  8 ataaacacttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcata 90  Q
    ||||||||||  ||||| |||  | ||||||||  |||||| ||||||| |||||| ||||| |||||||| |||||||||||    
T  30535679 ataaacacttgagagactgttttggagaacttatgaaaacaacttatgatatgttcgtaagctgttttcaggttattttcata 30535597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 425813 - 425858
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttca 88  Q
    |||||||||||||||||||||||||||  ||| ||| |||||||||    
T  425813 aaaacagcttatgacatgttcataagctatttccagcttattttca 425858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 25130078 - 25130123
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttca 88  Q
    ||||||| ||||||||||||||||||| ||||||||  ||||||||    
T  25130078 aaaacagtttatgacatgttcataagctgttttcagcatattttca 25130123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 36598346 - 36598387
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattt 85  Q
    ||||| |||||||||||||||||||| |||||||| ||||||    
T  36598346 aaacatcttatgacatgttcataagctgttttcagcttattt 36598387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 12110441 - 12110373
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||| ||||||||||||||| || | ||||| || ||||||||||||  | |||| |||||||||||    
T  12110441 aaaacaacttatgacatgttcacaaactgtttttagattattttcataagttcttcaagatagcttatg 12110373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 36517644 - 36517592
Alignment:
Q  59 tgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||||||||  ||||||||||||||||||||| | | || |||||||||||    
T  36517644 tgttcataagctattttcagtttattttcataatttctccaagatagcttatg 36517592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 43219793 - 43219825
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgtttt 75  Q
    ||||||||||||||||||||||||||| |||||    
T  43219793 aaaacagcttatgacatgttcataagctgtttt 43219825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 44151477 - 44151537
Alignment:
Q  51 ttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||||||||| ||||||  |||||||| |||||| ||||| ||||||| ||||| |||||    
T  44151477 ttatgacatgtccataagatgttttcagcttatttccataagcttttcaagatagtttatg 44151537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 696694 - 696635
Alignment:
Q  32 aagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  696694 aagaacttatcaaaacagcttatgacatgttcataagctgttttcagcttattctcataa 696635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 10616692 - 10616750
Alignment:
Q  33 agaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||| ||||||| |||||||||||||||||||| |||||||||||||||| ||||    
T  10616692 agaacttatcaaaacaccttatgacatgttcataagctgttttcagtttatttttataa 10616750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 31624183 - 31624122
Alignment:
Q  31 gaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataat 92  Q
    ||||||||||  ||||||||||||||||||||||||||| |||||||  |||||||||||||    
T  31624183 gaagaacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataat 31624122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 13908539 - 13908479
Alignment:
Q  48 agcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagctt 108  Q
    |||||||||||||||| ||||| |||||||| |||||||||||| || |||| ||||||||    
T  13908539 agcttatgacatgttcgtaagctgttttcagcttattttcataagctcttcatgatagctt 13908479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 769254 - 769185
Alignment:
Q  8 ataaacacttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttca 77  Q
    |||||||||| |||||| |||  || |||||||  |||||| |||||||||||||||||||| |||||||    
T  769254 ataaacacttgtgagactgtttggatgaacttatgaaaacatcttatgacatgttcataagctgttttca 769185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 10657317 - 10657252
Alignment:
Q  45 aacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttat 110  Q
    ||||||| || ||||| |||||||  ||||||||| ||||||||||| |||| |||||||||||||    
T  10657317 aacagctcataacatgctcataagatgttttcagtctattttcataagctttccacgatagcttat 10657252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 1575987 - 1575927
Alignment:
Q  32 aagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataat 92  Q
    |||||||||  |||||| |||||||||||||||||||| ||||| |  |||||||||||||    
T  1575987 aagaacttatgaaaacaacttatgacatgttcataagctgtttttaacttattttcataat 1575927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 28641738 - 28641786
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||| |||||||||||||| ||||| || ||||||||||||    
T  28641738 aaaacagcttataacatgttcataagctgtttttagcttattttcataa 28641786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 821872 - 821833
Alignment:
Q  51 ttatgacatgttcataagccgttttcagtttattttcata 90  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  821872 ttatgacatgttcataagctgttttcagcttattttcata 821833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 27894122 - 27894059
Alignment:
Q  48 agcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||||||| |||| ||||| | |||||||| |||||||||||| ||||||| |||| ||||||    
T  27894122 agcttatgatatgtccataaactgttttcagcttattttcataagcttttcaagatatcttatg 27894059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 4420716 - 4420658
Alignment:
Q  51 ttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagctta 109  Q
    ||||||||||||||||||| |||||||| |||||| ||||| || | || |||||||||    
T  4420716 ttatgacatgttcataagctgttttcagcttatttccataagctctccaagatagctta 4420658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 821501 - 821464
Alignment:
Q  48 agcttatgacatgttcataagccgttttcagtttattt 85  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  821501 agcttatgacatgttcataagtcgttttcagcttattt 821464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 103522 - 103466
Alignment:
Q  33 agaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcat 89  Q
    ||||||||| ||||||||||||||||| ||||||| | |||| ||| || |||||||    
T  103522 agaacttacaaaaacagcttatgacatattcataaactgtttacagcttgttttcat 103466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 696523 - 696491
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgtttt 75  Q
    ||||||||||||||||||||||||||| |||||    
T  696523 aaaacagcttatgacatgttcataagctgtttt 696491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 23272019 - 23272076
Alignment:
Q  32 aagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||| ||||||||||||||||  | |||||||| |||||||| ||||| ||||||    
T  23272019 aagaacttatcaaaacagcttatgac--gatcataagctgttttcagcttattctcataa 23272076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 33887911 - 33887843
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||| ||||||||||||||||| |||  |||||||  |||||| ||||| | ||||| |||||||||||    
T  33887911 aaaatagcttatgacatgttcacaagttgttttcaacttatttccataagcatttcaggatagcttatg 33887843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 28689431 - 28689508
Alignment:
Q  33 agaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttat 110  Q
    |||||||||  |||||||||||||||||| ||||||  |||||||| |||||||||||| |||| || ||||||||||    
T  28689431 agaacttacggaaacagcttatgacatgtccataagttgttttcagcttattttcataagctttccaagatagcttat 28689508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 6292574 - 6292526
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  6292574 aaaacagcttatgacatgttcataagctgttttcagcttattttcataa 6292526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 31517694 - 31517777
Alignment:
Q  8 ataaacacttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||| ||||| |||||| |||  | |||||||| ||||||| || ||||||||||||||||| |||||||| ||||||||||||    
T  31517694 ataagcacttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttattttcataa 31517777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 7262477 - 7262575
Alignment:
Q  13 cacttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||||||||||||||  | ||| ||||  |||||||||| |||||||||||||||| |||||||  |||||| || || || |||| |||||||||||    
T  7262477 cacttttgagacggttttggagagcttataaaaacagcttttgacatgttcataagctgttttcaccttatttccacaagctcttcaggatagcttatg 7262575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 11639376 - 11639453
Alignment:
Q  14 acttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||  || |||||| ||||  ||||||||||||||||||| ||||||| ||||| || ||||||||||||    
T  11639376 acttttgagacaatttagaagagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataa 11639453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 35925780 - 35925703
Alignment:
Q  34 gaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||||  ||||||||||||||||||||||||||| |||||||  |||||| ||||| || | || |||||||||||    
T  35925780 gaacttatgaaaacagcttatgacatgttcataagctgttttcaacttatttccataaactctccatgatagcttatg 35925703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 37593680 - 37593741
Alignment:
Q  50 cttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||||||||||||||||| |||||||| |||||||||||| || ||||  ||||||||||    
T  37593680 cttatgacatgttcataagctgttttcagcttattttcataagctcttcaaaatagcttatg 37593741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 37842327 - 37842412
Alignment:
Q  26 gttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||| ||||||||  |||||| || ||||||||||||||||| |||||||| ||||||| ||||  | |||| |||||||||||    
T  37842327 gttcagtagaacttatgaaaacatctaatgacatgttcataagcagttttcagcttatttttataagttcttcaagatagcttatg 37842412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 37431823 - 37431775
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||| |||||||| ||||||||||||||||||||||||||| |||||    
T  37431823 aaaacaccttatgacgtgttcataagccgttttcagtttatttccataa 37431775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 1565512 - 1565570
Alignment:
Q  31 gaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcat 89  Q
    ||||||||||  || |||||||||||||||| ||||||| |||||||| ||||||||||    
T  1565512 gaagaacttaggaagacagcttatgacatgtgcataagctgttttcagcttattttcat 1565570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 10854814 - 10854752
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatag 105  Q
    |||||||||||||||||||||| |||| |||||||| |||||||| ||| || |||| |||||    
T  10854814 aaaacagcttatgacatgttcacaagctgttttcagcttattttcttaagctgttcaggatag 10854752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 46252678 - 46252739
Alignment:
Q  50 cttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||||||||||||||||  |||||||| |||||||||||| || | || |||||||||||    
T  46252678 cttatgacatgttcataagttgttttcaggttattttcataagctctccaagatagcttatg 46252739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 2777997 - 2777925
Alignment:
Q  19 tgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||| ||| || ||||||||  ||| || |||||||| | |||||||||||||||||| ||||||||||||    
T  2777997 tgagactgtttaggagaacttatgaaaccaacttatgacgtattcataagccgttttcagcttattttcataa 2777925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 5591955 - 5592003
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||||||| || ||||||||||||||| ||||||| |||||    
T  5591955 aaaacagcttatgacacgtgcataagccgttttcaatttatttccataa 5592003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 10199397 - 10199445
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||| |||||||||||||||||||||  |||||||| ||||||||||||    
T  10199397 aaaatagcttatgacatgttcataagttgttttcagcttattttcataa 10199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 34290317 - 34290249
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||| |||||||||||| ||||||||  |||||||| ||||||||||||  | |||| |||||||||||    
T  34290317 aaaaaagcttatgacatattcataagttgttttcagcttattttcataagttcttcaagatagcttatg 34290249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 26184828 - 26184781
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||||||||| ||||||| |||||||| |||||| |||||    
T  26184828 aaacagcttatgacatgtccataagctgttttcagattatttccataa 26184781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 30815643 - 30815690
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||||||||||||||||||   |||||||| ||||||||||||    
T  30815643 aaacagcttatgacatgttcataaaatgttttcagcttattttcataa 30815690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 43420338 - 43420271
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||||||||||||||||||||| ||| |||||  |||||| || ||||| |||  |||||||||||    
T  43420338 aaacagcttatgacatgttcataatccgctttcaacttatttccaaaatctcttccagatagcttatg 43420271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 27140558 - 27140492
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttat 110  Q
    |||||||||||||||||| ||||||  |||||||| |||||| ||||| || | || ||||||||||    
T  27140558 aaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttat 27140492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 1509961 - 1510002
Alignment:
Q  50 cttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||||||| ||| |||||||| ||||||||||||    
T  1509961 cttatgacatgttcattagctgttttcagcttattttcataa 1510002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 4549747 - 4549714
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttca 77  Q
    |||||||||||||||||||||||||| |||||||    
T  4549747 aaacagcttatgacatgttcataagctgttttca 4549714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 43338210 - 43338149
Alignment:
Q  30 agaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||   |||||||||||||||||||||||| |  |||||||  |||||||||||    
T  43338210 agaagaacttatggaaacagcttatgacatgttcataatctattttcagcctattttcataa 43338149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 4202140 - 4202184
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttc 87  Q
    ||||||||||||||||||| |||||||  ||||||| ||||||||    
T  4202140 aaaacagcttatgacatgtccataagctattttcagcttattttc 4202184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 10744382 - 10744334
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||||||| ||||||||||||| |||||||  ||||||| ||||    
T  10744382 aaaacagcttatggcatgttcataagctgttttcatcttatttttataa 10744334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 11695941 - 11695889
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataatcttt 96  Q
    |||||| ||||||||||| ||||||| |||||||  |||||||||||| ||||    
T  11695941 aaacagtttatgacatgtccataagctgttttcaacttattttcataagcttt 11695889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 21002233 - 21002193
Alignment:
Q  51 ttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||||| ||||||| ||||||| |||||||||||||    
T  21002233 ttatgacatgtccataagctgttttcaatttattttcataa 21002193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 28836999 - 28837075
Alignment:
Q  8 ataaacacttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttatt 84  Q
    |||| ||||| |||||| ||| ||||||  | |||||||||||| ||||||||  ||||||| |||||||| |||||    
T  28836999 ataagcacttgtgagactgtttagaagacttaaccaaaacagctaatgacatgcacataagctgttttcagcttatt 28837075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 37416878 - 37416838
Alignment:
Q  51 ttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||| |||||||||||| ||||||||||||||| |||||    
T  37416878 ttatgaaatgttcataagctgttttcagtttatttccataa 37416838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 37517143 - 37517203
Alignment:
Q  32 aagaacttaccaaaacagcttatgac-atgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||| ||||||||||||||| || |||| ||||  |||||| |||||||||||||    
T  37517143 aagaacttacgaaaacagcttatgacaattttcaaaagcttttttcaatttattttcataa 37517203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 37811943 - 37811899
Alignment:
Q  33 agaacttaccaaaacagcttatgacatgttcataagccgttttca 77  Q
    ||||||||  ||||||||||||||||||||||||| | |||||||    
T  37811943 agaacttatgaaaacagcttatgacatgttcataaactgttttca 37811899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 38170679 - 38170723
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttc 87  Q
    ||||||||||||||||||||||||||  |||||||| || |||||    
T  38170679 aaaacagcttatgacatgttcataagttgttttcagcttgttttc 38170723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 42757154 - 42757210
Alignment:
Q  31 gaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttc 87  Q
    ||||||||||| |||||| ||||| |||| ||||||||| |||||||| || |||||    
T  42757154 gaagaacttacgaaaacaacttattacatattcataagctgttttcagctttttttc 42757210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 43332565 - 43332497
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||||||||||||| ||||  ||| | |||||||| ||||||| |||| || |||| |||||||||||    
T  43332565 aaaacagcttatgacctgtttctaacctgttttcagcttattttaataagctcttcaagatagcttatg 43332497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 3254319 - 3254264
Alignment:
Q  30 agaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattt 85  Q
    |||||||||||  ||||||||||||||||||||||||||| |||||||| ||||||    
T  3254319 agaagaacttaagaaaacagcttatgacatgttcataagctgttttcagcttattt 3254264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 20672825 - 20672764
Alignment:
Q  49 gcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttat 110  Q
    ||||||||||||||||||||| |||||||| |||||||||||| || | || ||||||||||    
T  20672825 gcttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttat 20672764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 926566 - 926514
Alignment:
Q  33 agaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattt 85  Q
    |||| ||| ||||||| ||||||||||||||||||||||||||||| ||||||    
T  926566 agaatttatcaaaacaacttatgacatgttcataagccgttttcagcttattt 926514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 11569447 - 11569514
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||||||||||||||| ||||||  |||||||| ||||||||| ||||| | || |||||||||||    
T  11569447 aaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatg 11569514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 2458545 - 2458623
Alignment:
Q  33 agaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||||||  || |||||||||| ||||||||||||| ||||||||||||||| ||||| || |  | |||||||||||    
T  2458545 agaacttatgaagacagcttatggcatgttcataagctgttttcagtttatttccataagctctctaggatagcttatg 2458623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 39866724 - 39866790
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttat 110  Q
    ||||| |||||  ||||| ||||||| ||||||||||||||||||||| || |||| ||||||||||    
T  39866724 aaacaacttatagcatgtccataagctgttttcagtttattttcataagctcttcaagatagcttat 39866790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 13459742 - 13459678
Alignment:
Q  27 ttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||| ||||||||  ||||||||||||||||| ||||||| | ||||||||  |||||||||||    
T  13459742 ttcaggagaacttatgaaaacagcttatgacattttcataaactgttttcagcctattttcataa 13459678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 42215295 - 42215343
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||||||||| ||||||||||| |||||||| |||||| |||||    
T  42215295 aaaacagcttatgacttgttcataagctgttttcagcttatttacataa 42215343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 9835890 - 9835937
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||||||||||||||||| |||||||  |||||| |||||    
T  9835890 aaacagcttatgacatgttcataagctgttttcatcttatttccataa 9835937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 14949982 - 14949879
Alignment:
Q  8 ataaacacttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagct 107  Q
    ||||||| || |||||| ||| || ||| ||||  |||| | |||||||||||| ||||||| |||||||| ||||||  ||||||| || | |||||||    
T  14949982 ataaacatttgtgagactgtttaggagagcttatgaaaataacttatgacatgtccataagctgttttcagcttatttctataatctctttaggatagct 14949883  T
Q  108 tatg 111  Q
    ||||    
T  14949882 tatg 14949879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 779039 - 779093
Alignment:
Q  32 aagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttatttt 86  Q
    |||||||||| |||||| |||||||||||||||||||  |||||||  |||||||    
T  779039 aagaacttacgaaaacaacttatgacatgttcataagttgttttcatcttatttt 779093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 2594981 - 2595034
Alignment:
Q  38 ttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||| |||||| |||||||||||||||||||  |||||||| ||||| ||||||    
T  2594981 ttacaaaaacaacttatgacatgttcataagttgttttcagcttattctcataa 2595034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 10383975 - 10383918
Alignment:
Q  34 gaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||  ||||||||||||||||| ||||||||| |||| ||| |||||| |||||    
T  10383975 gaacttatgaaaacagcttatgacattttcataagctgtttacagcttatttccataa 10383918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 5069777 - 5069725
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataatcttt 96  Q
    ||||| ||||| ||||||||||||| | ||||||| |||||||||||| ||||    
T  5069777 aaacatcttataacatgttcataagtcattttcagcttattttcataagcttt 5069725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 12851257 - 12851209
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||| |||||||||||||  |||||| | ||||||||||||    
T  12851257 aaaacagcttataacatgttcataagatgttttcggcttattttcataa 12851209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 30389180 - 30389132
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||| |||| ||||||||||||||||  |||||||| ||||||||||||    
T  30389180 aaaatagctaatgacatgttcataagttgttttcagcttattttcataa 30389132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 31751546 - 31751594
Alignment:
Q  44 aaacagcttatgacat-gttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||||||| ||||||||||  ||||||| ||||||||||||    
T  31751546 aaacagcttatgacattgttcataagctattttcagcttattttcataa 31751594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 34849176 - 34849136
Alignment:
Q  51 ttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||||||||||||||||||| | |||| |||||    
T  34849176 ttatgacatgttcataagccgttttcagctgatttccataa 34849136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 41606892 - 41606940
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||||||||||||| |||  |||||||| |||||| |||||    
T  41606892 aaaacagcttatgacatgttcaaaagttgttttcagcttatttccataa 41606940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 21043225 - 21043292
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||||||  || |||| |||||||||||    
T  21043225 aaacagcttatgacacgttcataagctgttttcagtgtattttcatatgctcttcaggatagcttatg 21043292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 1137827 - 1137745
Alignment:
Q  9 taaacacttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||| ||| || ||| || ||||||||  |||||| |||||||||||||||||||  ||||||||||||||| |||||    
T  1137827 taaacacttgtgacactgtttaggagaacttatgaaaacatcttatgacatgttcataagttgttttcagtttatttccataa 1137745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 18011987 - 18011884
Alignment:
Q  8 ataaacacttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagct 107  Q
    |||| ||||| |||||| |||| | ||| ||||  |||||||||||| | ||||  |||||||||||| || |||||||||||| || |||| |||||||    
T  18011987 ataagcacttctgagaccgttcgggagagcttatgaaaacagcttataatatgtatataagccgtttttagcttattttcataaactcttcaagatagct 18011888  T
Q  108 tatg 111  Q
    ||||    
T  18011887 tatg 18011884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 52746830 - 52746897
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||||||| ||||||||||||||| |||||||| | |||||||||| | || || |||||||||||    
T  52746830 aaacagcttaagacatgttcataagctgttttcagctgattttcataagccttacaagatagcttatg 52746897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 22573267 - 22573216
Alignment:
Q  16 ttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataa 67  Q
    ||||||||  ||||||||||||||| |||||| |||||||||||||| ||||    
T  22573267 ttttgagagtgttcagaagaacttatcaaaacggcttatgacatgtttataa 22573216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 47800701 - 47800636
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||||||||||   ||||| |||||| |||||||| |||||||||||| || |||| |||||||||||    
T  47800701 aaaacagcttat---atgtttataagcggttttcagcttattttcataagctcttcaagatagcttatg 47800636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 13126552 - 13126613
Alignment:
Q  31 gaagaacttaccaaaacagcttatgacatgt-tcataagccgttttcagtttattttcataa 91  Q
    ||||||||||  ||||||||||||||||| | ||||||||  ||||||| ||||||||||||    
T  13126552 gaagaacttataaaaacagcttatgacatttatcataagcttttttcagcttattttcataa 13126613  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 22236094 - 22236142
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||| |||||||||||| ||| |||||| | ||||||||||||    
T  22236094 aaaacagcttgtgacatgttcatgagctgttttctgcttattttcataa 22236142  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 23819170 - 23819102
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||||||||||||||||| ||||||  |||||||  ||||||  |||| || |||| |||||||||||    
T  23819170 aaaacagcttatgacatgtccataagttgttttcatcttatttctataagctcttcaagatagcttatg 23819102  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 28300288 - 28300356
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||||| |||||||||||| ||||  |||||||  |||||||||||| || |||| |||||| ||||    
T  28300288 aaaacagcctatgacatgttcttaagttgttttcaacttattttcataagctcttcaagatagcctatg 28300356  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 48719388 - 48719428
Alignment:
Q  51 ttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||||||| ||||| |||||||| ||||||||||||    
T  48719388 ttatgacatgttcgtaagctgttttcagcttattttcataa 48719428  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 56249613 - 56249561
Alignment:
Q  35 aacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttc 87  Q
    |||||| |||||||||||||||||| |||||||||  ||||||  ||||||||    
T  56249613 aacttatcaaaacagcttatgacattttcataagcttttttcaacttattttc 56249561  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 5902503 - 5902573
Alignment:
Q  8 ataaacacttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcag 78  Q
    |||||||||| |||||| |||  ||||||||||  ||||||||||||||||||||||||| | ||||||||    
T  5902503 ataaacacttgtgagactgtttggaagaacttatgaaaacagcttatgacatgttcataaactgttttcag 5902573  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 1647330 - 1647269
Alignment:
Q  30 agaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||||  |||||||||||||||||| |||||||| |||||||| |||||| |||||    
T  1647330 agaagaacttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataa 1647269  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 43529847 - 43529895
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||||||| |||||||||||||  ||||||||||||||||||||    
T  43529847 aaaacagcttatgccatgttcataagctattttcagtttattttcataa 43529895  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 3067333 - 3067436
Alignment:
Q  8 ataaacacttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagct 107  Q
    |||| ||||| |||||| |||| | ||| ||||  |||||||||||| | ||||  |||||||||||| || |||||||||||| || |||| |||||||    
T  3067333 ataagcacttctgagaccgttcgggagagcttatgaaaacagcttataatatgtatataagccgtttttagcttattttcataaactcttcaagatagct 3067432  T
Q  108 tatg 111  Q
    ||||    
T  3067433 tatg 3067436  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 680584 - 680516
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    |||||||||||||||||||| |||| | |||||||| ||||||||| ||  | |||| |||||||||||    
T  680584 aaaacagcttatgacatgtttataaactgttttcagcttattttcacaagttcttcaagatagcttatg 680516  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 35379005 - 35379073
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||||||| ||||| ||||||||||  |||||||| |||||||||||| || | || |||||||||||    
T  35379005 aaaacagctgatgacttgttcataagttgttttcagcttattttcataagctctccaagatagcttatg 35379073  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 12147533 - 12147490
Alignment:
Q  48 agcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||||||||||||||   |||||||||||||||||||||    
T  12147533 agcttatgacatgttcataaattgttttcagtttattttcataa 12147490  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 14666664 - 14666581
Alignment:
Q  8 ataaacacttttgagacggttcagaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||||||| ||||||| ||||||||||  ||   ||||| ||||||||||||||||| |  |||||||  ||||||||||||    
T  14666664 ataaacacttgtgagacgtttcagaagaatatatggaaacaacttatgacatgttcataggttgttttcaccttattttcataa 14666581  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 26626965 - 26626886
Alignment:
Q  33 agaacttaccaaaacagcttatgacat-gttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||||||| |||| |||||||||||| |||||||| | |||||||| ||||||||||||  | | || |||||||||||    
T  26626965 agaacttacgaaaatagcttatgacattgttcataatctgttttcaggttattttcataagttctgcaagatagcttatg 26626886  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 32821889 - 32821822
Alignment:
Q  44 aaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||| |||||||||||| ||||||| |||||||||||||||  |||| || || | |||||||||||    
T  32821889 aaacaacttatgacatgtccataagctgttttcagtttatttctataagctctttaggatagcttatg 32821822  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 33256821 - 33256774
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcata 90  Q
    ||||||||||||||||||||||||| | ||| |||| |||||||||||    
T  33256821 aaaacagcttatgacatgttcataaactgttctcagcttattttcata 33256774  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 787423 - 787373
Alignment:
Q  33 agaacttaccaaaacagcttatgacatgttcataagccgttttcagtttat 83  Q
    ||||||||  ||||||||||||||||||| ||||||| |||||||| ||||    
T  787423 agaacttatgaaaacagcttatgacatgtccataagctgttttcagcttat 787373  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 29316754 - 29316812
Alignment:
Q  33 agaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    |||||| || ||||||||||||||||||||||||||   ||||||| |||||| |||||    
T  29316754 agaactaacaaaaacagcttatgacatgttcataagttcttttcagcttatttccataa 29316812  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 44438828 - 44438870
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattt 85  Q
    ||||||||||||||||||||||||| | |||||||| ||||||    
T  44438828 aaaacagcttatgacatgttcataacctgttttcagcttattt 44438870  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 33580585 - 33580536
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataat 92  Q
    ||||||||||||||||| | ||||||| | |||||| |||||||||||||    
T  33580585 aaaacagcttatgacatatccataagctgctttcagattattttcataat 33580536  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 35486008 - 35485931
Alignment:
Q  33 agaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttat 110  Q
    ||||||||| ||| || ||||||| |||||||||||| |||||||| | |||| ||||  || |||| ||||||||||    
T  35486008 agaacttactaaagcaacttatgatatgttcataagctgttttcagctcatttccataggctcttcaggatagcttat 35485931  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 43635097 - 43635158
Alignment:
Q  50 cttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||||||||||   ||||| ||||| || |||||||||||| ||||||| |||||||||||    
T  43635097 cttatgacatgtctgtaagctgttttaagcttattttcataagcttttcatgatagcttatg 43635158  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 1801759 - 1801723
Alignment:
Q  33 agaacttaccaaaacagcttatgacatgttcataagc 69  Q
    ||||||||  |||||||||||||||||||||||||||    
T  1801759 agaacttatgaaaacagcttatgacatgttcataagc 1801723  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 12313162 - 12313230
Alignment:
Q  43 aaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||||||||||| ||||||||||||  | |||||  |||||||||||| || | || |||||||||||    
T  12313162 aaaacagcttatgccatgttcataagttgatttcaccttattttcataagctctccaagatagcttatg 12313230  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 33192295 - 33192215
Alignment:
Q  31 gaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataatcttttcacgatagcttatg 111  Q
    ||||||||||  ||||||| ||||||||| | ||||||| |||||||| |||| || |||| || | || |||||||||||    
T  33192295 gaagaacttatgaaaacagtttatgacatatccataagctgttttcagcttatatttataagctctccaggatagcttatg 33192215  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 44606087 - 44606147
Alignment:
Q  31 gaagaacttaccaaaacagcttatgacatgttcataagccgttttcagtttattttcataa 91  Q
    ||||||||||  |||||| |||||||||||| ||||||  |||||||| | ||||||||||    
T  44606087 gaagaacttatgaaaacaacttatgacatgtccataagttgttttcagctgattttcataa 44606147  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 98618 - 98663
Alignment:
Q  32 aagaacttaccaaaacagcttatgacatgttcataagccgttttca 77  Q
    ||||| |||| |||| |||||||||||||||||||||| |||||||    
T  98618 aagaatttacgaaaatagcttatgacatgttcataagctgttttca 98663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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