View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4763_high_2 (Length: 416)

Name: NF4763_high_2
Description: NF4763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4763_high_2
NF4763_high_2
[»] chr1 (2 HSPs)
chr1 (14-405)||(51383111-51383502)
chr1 (239-362)||(23262461-23262585)
[»] chr6 (2 HSPs)
chr6 (163-266)||(11926098-11926201)
chr6 (312-405)||(11926265-11926358)
[»] chr4 (1 HSPs)
chr4 (239-362)||(56477360-56477484)
[»] chr3 (7 HSPs)
chr3 (162-242)||(949591-949671)
chr3 (310-405)||(949754-949847)
chr3 (162-239)||(14172174-14172251)
chr3 (227-302)||(949691-949766)
chr3 (227-302)||(14172274-14172349)
chr3 (310-405)||(14172337-14172430)
chr3 (77-131)||(3584576-3584630)
[»] chr5 (3 HSPs)
chr5 (227-302)||(7573973-7574048)
chr5 (162-242)||(7573873-7573953)
chr5 (320-405)||(7574046-7574129)
[»] scaffold0007 (3 HSPs)
scaffold0007 (227-302)||(255225-255300)
scaffold0007 (170-242)||(255320-255392)
scaffold0007 (310-405)||(255144-255237)
[»] chr7 (3 HSPs)
chr7 (227-302)||(40725085-40725160)
chr7 (310-405)||(40725004-40725097)
chr7 (201-242)||(40725180-40725221)


Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Original strand, 51383111 - 51383502
Alignment:
Q  14 caaattaaactcaaatattnnnnnnnntgttgaatgaacacaaatgagtcattcgaactttggtcttgatagtgtttgaatggctaaggcagtatcattg 113  Q
    |||||||||||||||||||        ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51383111 caaattaaactcaaatattaaaaaaaatgttgaatgaacacatatgagtcattcgaactttggtcttgatagtgtttgaatggctaaggcagtatcattg 51383210  T
Q  114 aaattccattgcaattctagcatcaatctgataatttaattcattacttgataccaccatgtatataccatattgatgtaggaattttagttaaagatta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51383211 aaattccattgcaattctagcatcaatctgataatttaattcattacttgataccaccatgtatataccatattgatgtaggaattttagttaaagatta 51383310  T
Q  214 tcacataactaatggatttaaagtgggttatttgtttgtgcaatcaaagtgattgatactgttatactcaaacttaagaacatcaaaattgtacttaaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51383311 tcacataactaatggatttaaagtgggttatttgtttgtgcaatcaaagtgattgatactgttatactcaaacttaagaacatcaaaattgtacttaaaa 51383410  T
Q  314 caccagaatctctaatattacgtttgctctagcttgttgtccaacttaaagctcttttatagccttttacttgatcaaaactcagtcttctt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51383411 caccagaatctctaatattacgtttgctctagcttgttgtccaacttaaagctcttttatagccttttacttgatcaaaactcagtcttctt 51383502  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 239 - 362
Target Start/End: Complemental strand, 23262585 - 23262461
Alignment:
Q  239 ggttatttgtttgtgcaatcaaagtgattgatactgttatactcaaacttaagaacatcaaaattgtac-ttaaaacaccagaatctctaatattacgtt 337  Q
    |||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| |||||| || ||| ||||||||| || ||  ||| | | |    
T  23262585 ggttatttgtttatgcaatcaaagtgattgatattattatactcaaacttaagaacatcgaaattggactttagaacaccagagtcactcctatcatgct 23262486  T
Q  338 tgctctagcttgttgtccaacttaa 362  Q
    ||||||||||||||||| |||||||    
T  23262485 tgctctagcttgttgtcaaacttaa 23262461  T

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Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 163 - 266
Target Start/End: Original strand, 11926098 - 11926201
Alignment:
Q  163 gataccaccatgtatataccatattgatgtaggaattttagttaaagattatcacataactaatggatttaaagtgggttatttgtttgtgcaatcaaag 262  Q
    |||||||||||||| ||||||||||||||||| |||||||||| ||| || ||||||||||||||||||  |||| | ||||||||||||||||||||||    
T  11926098 gataccaccatgtacataccatattgatgtagtaattttagttgaaggttctcacataactaatggattccaagttgattatttgtttgtgcaatcaaag 11926197  T
Q  263 tgat 266  Q
    ||||    
T  11926198 tgat 11926201  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 405
Target Start/End: Original strand, 11926265 - 11926358
Alignment:
Q  312 aacaccagaatctctaatattacgtttgctctagcttgttgtccaacttaaagctcttttat-agccttttacttgatcaaaactcagtcttctt 405  Q
    ||||||| ||||||| |||| ||   |||||||||||||||||||||||  |||||| |||| || |||||||||| |||||||| |||||||||    
T  11926265 aacaccaaaatctctgatatcacacatgctctagcttgttgtccaactt-gagctctgttataaggcttttacttgctcaaaacttagtcttctt 11926358  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 56477360 - 56477484
Alignment:
Q  239 ggttatttgtttgtgcaatcaaagtgattgatactgttatactcaaacttaagaacatcaaaattgta-cttaaaacaccagaatctctaatattacgtt 337  Q
    |||||||||||| |||||||| ||||||||||| | ||||||||||||||||||||||| |||||| |  ||| ||||||||| || ||  ||| | | |    
T  56477360 ggttatttgtttatgcaatcatagtgattgatattattatactcaaacttaagaacatcgaaattggattttagaacaccagagtcactcctatcatgct 56477459  T
Q  338 tgctctagcttgttgtccaacttaa 362  Q
    ||||||||||||||||| |||||||    
T  56477460 tgctctagcttgttgtcaaacttaa 56477484  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 949591 - 949671
Alignment:
Q  162 tgataccaccatgtatataccatattgatgtaggaattttagttaaagattatcacataactaatggatttaaagtgggtt 242  Q
    ||||||| ||||||||||||||||||||||||| || | |||||| |||||||||||||||||||| |||| |||||||||    
T  949591 tgataccgccatgtatataccatattgatgtagtaaatgtagttacagattatcacataactaatgcatttcaagtgggtt 949671  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 405
Target Start/End: Original strand, 949754 - 949847
Alignment:
Q  310 aaaacaccagaatctctaatattacgtttgctctagcttgttgtccaacttaaagctcttttat-agccttttacttgatcaaaactcagtcttctt 405  Q
    |||||| || |||||||||||| ||||||| |||||||||||   ||||||||||||||||| | || ||||||||| |||||||||||||||||||    
T  949754 aaaacatcaaaatctctaatatcacgtttgatctagcttgtt---caacttaaagctcttttgtaaggcttttacttcatcaaaactcagtcttctt 949847  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 14172174 - 14172251
Alignment:
Q  162 tgataccaccatgtatataccatattgatgtaggaattttagttaaagattatcacataactaatggatttaaagtgg 239  Q
    ||||||| ||||||||||||||||||||||||| || | |||||| |||||||||||||||||| | |||| ||||||    
T  14172174 tgataccgccatgtatataccatattgatgtagtaaatgtagttatagattatcacataactaaagcatttcaagtgg 14172251  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 949691 - 949766
Alignment:
Q  227 ggatttaaagtgggttatttgtttgtgcaatcaaagtgattgatactgttatactcaaacttaagaacatcaaaat 302  Q
    |||||| || |||||||||| |||||||||||||||||||||||| |  ||||||| ||||||| |||||||||||    
T  949691 ggattttaaatgggttatttatttgtgcaatcaaagtgattgatattactatactctaacttaaaaacatcaaaat 949766  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 14172274 - 14172349
Alignment:
Q  227 ggatttaaagtgggttatttgtttgtgcaatcaaagtgattgatactgttatactcaaacttaagaacatcaaaat 302  Q
    |||||| || |||||||||| |||||||||||||||||||||||| |  ||||||||||| ||| |||||||||||    
T  14172274 ggatttcaaatgggttatttatttgtgcaatcaaagtgattgatattactatactcaaacataaaaacatcaaaat 14172349  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 405
Target Start/End: Original strand, 14172337 - 14172430
Alignment:
Q  310 aaaacaccagaatctctaatattacgtttgctctagcttgttgtccaacttaaagctcttttat-agccttttacttgatcaaaactcagtcttctt 405  Q
    |||||| || |||||||||||| ||||||| |||||||||||   ||||||||||||||||| | || ||||||||| || ||||||| ||||||||    
T  14172337 aaaacatcaaaatctctaatatcacgtttgatctagcttgtt---caacttaaagctcttttgtaaggcttttacttcattaaaactctgtcttctt 14172430  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 3584576 - 3584630
Alignment:
Q  77 tcttgatagtgtttgaatggctaaggcagtatcattgaaattccattgcaattct 131  Q
    ||||||||||||||||||| |||| ||  |||||||||| |||||||| ||||||    
T  3584576 tcttgatagtgtttgaatgtctaatgcgatatcattgaatttccattgaaattct 3584630  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 7573973 - 7574048
Alignment:
Q  227 ggatttaaagtgggttatttgtttgtgcaatcaaagtgattgatactgttatactcaaacttaagaacatcaaaat 302  Q
    |||||| || |||||||||| ||||||||||||||||||||||||||  ||||||||||||||| |||||||||||    
T  7573973 ggatttcaaatgggttatttatttgtgcaatcaaagtgattgatactactatactcaaacttaaaaacatcaaaat 7574048  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 7573873 - 7573953
Alignment:
Q  162 tgataccaccatgtatataccatattgatgtaggaattttagttaaagattatcacataactaatggatttaaagtgggtt 242  Q
    ||||||| |||||||||||| ||||| |||||| || | |||||| |||||||||||||||||||| |||| |||||||||    
T  7573873 tgataccgccatgtatatactatattaatgtagcaaatgtagttacagattatcacataactaatgcatttcaagtgggtt 7573953  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 405
Target Start/End: Original strand, 7574046 - 7574129
Alignment:
Q  320 aatctctaatattacgtttgctctagcttgttgtccaacttaaagctcttttat-agccttttacttgatcaaaactcagtcttctt 405  Q
    |||||||||||| ||||||| |||||||||||   ||||| ||||||||||| | || ||||||||| |||||||| ||||||||||    
T  7574046 aatctctaatatcacgtttgatctagcttgtt---caactgaaagctcttttttaaggcttttacttcatcaaaacccagtcttctt 7574129  T

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Target: scaffold0007 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 302
Target Start/End: Complemental strand, 255300 - 255225
Alignment:
Q  227 ggatttaaagtgggttatttgtttgtgcaatcaaagtgattgatactgttatactcaaacttaagaacatcaaaat 302  Q
    |||||| || |||||||||| |||||||||||||||||||||||| |  ||||||||||||||| |||||||||||    
T  255300 ggatttcaaatgggttatttatttgtgcaatcaaagtgattgatattactatactcaaacttaaaaacatcaaaat 255225  T

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Target: scaffold0007; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 255392 - 255320
Alignment:
Q  170 ccatgtatataccatattgatgtaggaattttagttaaagattatcacataactaatggatttaaagtgggtt 242  Q
    ||||||||||||||||||||||||| || | ||||| || |||||||||||| ||||| |||| |||||||||    
T  255392 ccatgtatataccatattgatgtagtaaatgtagttgaatattatcacataaataatgcattttaagtgggtt 255320  T

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Target: scaffold0007; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 405
Target Start/End: Complemental strand, 255237 - 255144
Alignment:
Q  310 aaaacaccagaatctctaatattacgtttgctctagcttgttgtccaacttaaagctcttttat-agccttttacttgatcaaaactcagtcttctt 405  Q
    |||||| || |||||||||||| ||||||| |||||||||||   ||||||||||||||||| | || ||||||||| || ||||||| ||||||||    
T  255237 aaaacatcaaaatctctaatatcacgtttgatctagcttgtt---caacttaaagctcttttgtaaggcttttacttcattaaaactcggtcttctt 255144  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 302
Target Start/End: Complemental strand, 40725160 - 40725085
Alignment:
Q  227 ggatttaaagtgggttatttgtttgtgcaatcaaagtgattgatactgttatactcaaacttaagaacatcaaaat 302  Q
    |||||| || |||||||||| |||||||||||||||||||||||| |  ||||||||||||||| |||||||||||    
T  40725160 ggatttcaaatgggttatttatttgtgcaatcaaagtgattgatattactatactcaaacttaaaaacatcaaaat 40725085  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 405
Target Start/End: Complemental strand, 40725097 - 40725004
Alignment:
Q  310 aaaacaccagaatctctaatattacgtttgctctagcttgttgtccaacttaaagctcttttat-agccttttacttgatcaaaactcagtcttctt 405  Q
    |||||| || |||||||||||| ||||||| |||||||||||   ||||||||||||||||| | || ||||||||| |||||||||||||||||||    
T  40725097 aaaacatcaaaatctctaatatcacgtttgatctagcttgtt---caacttaaagctcttttgtaaggcttttacttcatcaaaactcagtcttctt 40725004  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 40725221 - 40725180
Alignment:
Q  201 tagttaaagattatcacataactaatggatttaaagtgggtt 242  Q
    |||||| |||||||||||||||||||| |||| |||||||||    
T  40725221 tagttacagattatcacataactaatgcatttcaagtgggtt 40725180  T

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