View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4763_high_8 (Length: 277)
Name: NF4763_high_8
Description: NF4763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4763_high_8 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 36149632 - 36149365
Alignment:
| Q |
10 |
agaagaagaacttgtcaattacacatatgcactcaaaatagatgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatggaaaat |
109 |
Q |
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| T |
36149632 |
agaagaagcacttgtcaattacacatgtgcactcaaaatagatgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatggaaaat |
36149533 |
T |
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| Q |
110 |
gattctccgcctccttcaccgccgccaccactgcatggtgtcgaagtaattccacacaccatggaatctcaagttcacaaagaagaagcactcatcatcc |
209 |
Q |
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| T |
36149532 |
gattctccgcctccttcaccgccgccaccactgcatggtgtcgaagtaattccacacacaatggaatctcaagttcacaaagaagaagcactcatcatcc |
36149433 |
T |
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| Q |
210 |
aaacatgcgcactgaaaatagacgacaaagaagaacactctcctgatcaaggacaagaagtagcacac |
277 |
Q |
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| T |
36149432 |
aaacatgcgcactgaaaatagacgacaaagaagaacactctcctaatcaaggacaagaagtagcacac |
36149365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 36083533 - 36083446
Alignment:
| Q |
32 |
acatatgcactcaaaatagatgacaaagaagaagaacactctcctaaaca---acaagaagaagttcccatgatggaaaatgattctc |
116 |
Q |
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| T |
36083533 |
acatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaagtacacatgaaggaaagtgattctc |
36083446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 192
Target Start/End: Complemental strand, 36149799 - 36149636
Alignment:
| Q |
32 |
acatatgcactcaaaatagatgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatggaaaatgattctccgcctcctt------ |
125 |
Q |
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| T |
36149799 |
acatgtgcactcaaaatagatgagaaagaagaaga---ctctcccaagctagaaaaagaagtgcaaatgaaggaaagtgattctccgcctccttcaccac |
36149703 |
T |
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| Q |
126 |
caccgccgccaccactgcatggtgtcgaagtaattccacacaccatggaatctcaagttcacaaaga |
192 |
Q |
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| T |
36149702 |
caccaccgccacagctgcaagaagtggaagtgattccacacatcatggaagctcaaattcacaaaga |
36149636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 36149822 - 36149759
Alignment:
| Q |
189 |
aagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaacactctcc |
252 |
Q |
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| T |
36149822 |
aagaagaagcacttctcctccaaacatgtgcactcaaaatagatgagaaagaagaagactctcc |
36149759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 32 - 269
Target Start/End: Original strand, 26527381 - 26527621
Alignment:
| Q |
32 |
acatatgcactcaaaatagatgacaaagaagaagaacactctcctaaacaacaagaagaagttcccatgatggaaaatgattctccgcctccttcaccgc |
131 |
Q |
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| T |
26527381 |
acatgtgcactcaaaatagatgagatagaagaa---cactctcccaagctagaaaaagaagtgcacatgaatgaaagtgattttccgcctccttcaccac |
26527477 |
T |
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| Q |
132 |
------cgccaccactgcatggtgtcgaagtaattccacacaccatggaatctcaagttcacaaagaagaagcactcatcatccaaacatgcgcactgaa |
225 |
Q |
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| T |
26527478 |
taccaccgccactgctgtatgaagtggaagtgattccccacaccatggaagctcatgttcacaaagaagaagcactcatcatccaaacatgcgcactgaa |
26527577 |
T |
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| Q |
226 |
aatagacgacaaagaagaacactctcctgatcaaggacaagaag |
269 |
Q |
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| T |
26527578 |
aatagacgacaaagaagaacagtctcctaagcaaggacaagaag |
26527621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 26527358 - 26527421
Alignment:
| Q |
189 |
aagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaacactctcc |
252 |
Q |
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| T |
26527358 |
aagaagaagcacttctcctccaaacatgtgcactcaaaatagatgagatagaagaacactctcc |
26527421 |
T |
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