View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4763_low_11 (Length: 240)
Name: NF4763_low_11
Description: NF4763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4763_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 439548 - 439636
Alignment:
| Q |
136 |
aggtattattacaatctatagaaacaattcttagctgaagtaacaaacagggttgaaaatttcaaactaattattacagtaattactagt |
225 |
Q |
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| T |
439548 |
aggtattattacaatctatagaaacaattcttagctgaagtaataaacagggttgaaaatttcata-taattattacagtaattactagt |
439636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 439411 - 439496
Alignment:
| Q |
1 |
atttttatgtgaaatttgatttacc--attaaagtgatctggatggctgagatttcgtatgtttttctatcacatatataaagaaa |
84 |
Q |
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| T |
439411 |
atttttatgtgaaatttgatttaccccattaaagtgatctggatggctgagatttcgtatgtttttctatcacatataaaaagaaa |
439496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 8778971 - 8779043
Alignment:
| Q |
136 |
aggtattattacaatctatagaaacaattcttagctgaagtaacaaacagggttgaaaatttcaaactaatta |
208 |
Q |
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| T |
8778971 |
aggtatcattacaatctatagaaacaattcttagctgaagtaacaaacagggttgaaaattacatactaatta |
8779043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 8778921 - 8778952
Alignment:
| Q |
136 |
aggtattattacaatctatagaaacaattctt |
167 |
Q |
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| T |
8778921 |
aggtattattacaatctatagaaacaattctt |
8778952 |
T |
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