View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4763_low_5 (Length: 328)
Name: NF4763_low_5
Description: NF4763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4763_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 46768046 - 46768336
Alignment:
| Q |
19 |
taggactgtttgattttgacattgaaatgcttgtctgcaaagtggacaaggtttttgaattcattgtcatcaatgaaaccgttatgattggtgtctgcag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46768046 |
taggactgtttgattttgacattgaaatgcttgtctgcaaagtggacaaggtttttgaattcattgtcatcaatgaaaccgttatgattggtgtctgcag |
46768145 |
T |
|
| Q |
119 |
cgtaaaagtctggacatatactccaagagacaaggagtcctcttgtaaggcgcacagcatgtcgcagttcctctttgctgattttgccatcattttttgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46768146 |
cgtaaaagtctggacatatactccaagagacaaggagtcctcttgtaaggcgcacagcatgtcgcagttcctctttgctgattttgccatcattttttgt |
46768245 |
T |
|
| Q |
219 |
gtcaaatgttgtcttcaaccataacttgaattgctccaccgtcatcacacgtttcccttgatgatgatcactgaaccctttgtgatccatg |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46768246 |
gtcaaatgttgtcttcaaccataacttgaattgctccaccgtcatcacacgtttcccttgatgatgatcactgaaccctttgtgatccatg |
46768336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 309
Target Start/End: Original strand, 46772839 - 46773116
Alignment:
| Q |
29 |
tgattttgacattgaaatgcttgtctgcaaagtggacaaggtttttgaattcattgtcatcaatgaaaccgttatgattggtgtctgcagcgtaaaagtc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| || |||| ||||||| | ||||| |
|
|
| T |
46772839 |
tgattttgacattgaaatgcttgtctgcaaagtggacaaggtttctgacttcattttcatcaatgaaaccgttgtggttggcgtctgcaaacttgaagtc |
46772938 |
T |
|
| Q |
129 |
tgga-catatactccaagagacaaggagtcctcttgtaaggcgcacagcatgtcgcagttcctctttgctgattttgccatcattttttgtgtcaaatgt |
227 |
Q |
| |
|
|| | || | ||||||||| ||| ||||||||| | ||||||||||||||||||||||||||||||||| ||| | |||||| ||||||||||| | |
|
|
| T |
46772939 |
tgtatcaca-actccaagatgcaaagagtcctctagcaaggcgcacagcatgtcgcagttcctctttgctcattcttccatcaccgtttgtgtcaaacgc |
46773037 |
T |
|
| Q |
228 |
tgtcttcaaccataacttgaattgctccaccgtcatcacacgtttcccttgatgatgatcactgaaccctttgtgatccatg |
309 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || || ||||||| || ||||||||||||| |||||| |
|
|
| T |
46773038 |
tgtcttcaaccatagtttgaattgctccaccgtcatcacacgctttcc---atgatgaccattgaaccctttgtgctccatg |
46773116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University