View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4763_low_6 (Length: 308)
Name: NF4763_low_6
Description: NF4763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4763_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 581195 - 580914
Alignment:
| Q |
18 |
agaacaagtgtctcgagaaccggtgccttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacac |
117 |
Q |
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| T |
581195 |
agaacaagtgtctcgagaaccggtgccttttgaagcaaggttaagagaatatcaacactaacgaagccaacctccaaatgggtcaacattggaaatacac |
581096 |
T |
|
| Q |
118 |
atagcttttttggtagcatctttttcagatccagaacctggaatggatgacgcaacgaaactgatttatattataacaaaaggattaaactcataaatat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
581095 |
atagcttttttggtagcatctttttcagatccagaacctggaatggatgacacaacgaaactgatttatattacaacaaaaggattaaactcataaatat |
580996 |
T |
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| Q |
218 |
ttatcctacttgtgctacattattataaaaataaattacttcaagatcatgacattcattgttaaaaacactaaagaataat |
299 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580995 |
ttatcctacttgtgatacattattataaaaataaattacttcaagatcatgacattcattgttaaaaacactaaagaataat |
580914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 1207636 - 1207516
Alignment:
| Q |
17 |
aagaacaagtgtctcgagaaccggtgccttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaataca |
116 |
Q |
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| T |
1207636 |
aagaacgagtgtcttgagaacaggtgtcttttgaagtaatgctaagagaatttcgacactaactaagccaacctccaaatcggtcaacattggaaatacg |
1207537 |
T |
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| Q |
117 |
catagcttttttggtagcatc |
137 |
Q |
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| T |
1207536 |
cacagctcttttggttgcatc |
1207516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 1214837 - 1214741
Alignment:
| Q |
24 |
agtgtctcgagaaccggtgccttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacacata |
120 |
Q |
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||||||| ||||||||||| ||||| |||||||| ||| |||||||||||||||| || ||||| |||||||||| |||||||||||||||||||| |
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| T |
1214837 |
agtgtcttgagaaccggtgtcttttcaagcaaggctaacagaatatcaacactaagtaagccaacatccaaatgggccaacattggaaatacacata |
1214741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 1201454 - 1201351
Alignment:
| Q |
18 |
agaacaagtgtctcgagaaccggtgccttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacac |
117 |
Q |
| |
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||||| ||||||| ||||||||||| |||||| || ||| |||||| |||||||||||| || |||||||||||||| |||||| ||| |||||||| |
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| T |
1201454 |
agaactagtgtcttgagaaccggtgtcttttgtagtaagaccaagagattatcaacactaatcaagccaacctccaaatgtgtcaacgttgaaaatacac |
1201355 |
T |
|
| Q |
118 |
atag |
121 |
Q |
| |
|
|||| |
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|
| T |
1201354 |
atag |
1201351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 8188744 - 8188851
Alignment:
| Q |
17 |
aagaacaagtgtctcgagaaccggtgccttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaataca |
116 |
Q |
| |
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|||||| ||||||| ||||||||| | |||||||||||||| ||| ||||||| ||||||||| || ||||||||||||| ||||||||||||||||||| |
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| T |
8188744 |
aagaactagtgtcttgagaaccggcgtcttttgaagcaaggctaacagaatattaacactaactaaaccaacctccaaatcggtcaacattggaaataca |
8188843 |
T |
|
| Q |
117 |
catagctt |
124 |
Q |
| |
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|||||||| |
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|
| T |
8188844 |
catagctt |
8188851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 8188864 - 8188904
Alignment:
| Q |
149 |
cagaacctggaatggatgacgcaacgaaactgatttatatt |
189 |
Q |
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|||||||||||||| ||| | |||||||||||||||||||| |
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| T |
8188864 |
cagaacctggaatgaatggcacaacgaaactgatttatatt |
8188904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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