View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4763_low_7 (Length: 293)
Name: NF4763_low_7
Description: NF4763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4763_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 3 - 275
Target Start/End: Complemental strand, 34501991 - 34501719
Alignment:
| Q |
3 |
gaatggcttaaacaaacgctctttatgcatgttgccagagccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcag |
102 |
Q |
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| T |
34501991 |
gaatggcttaaacaaacgctctttatgcatgttgccagagccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcag |
34501892 |
T |
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| Q |
103 |
acaatcaacgtccatcaatatatgttatcaatataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattgga |
202 |
Q |
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||| || || ||| |||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34501891 |
acagtctacatccttcaatatatgatatcagtataattattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattgga |
34501792 |
T |
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| Q |
203 |
aagtattggtgtatacatttgtgatcctcttatgtttggttttacacattcaaagggtttgttacatattagg |
275 |
Q |
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| T |
34501791 |
aagtattggtgtatacatttgtgatcctcttatgtttggttttacacattcaaagggtttgttacatattagg |
34501719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 40 - 271
Target Start/End: Original strand, 44460730 - 44460961
Alignment:
| Q |
40 |
gagccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagacaatcaacgtccatcaatatatgttatcaatataat |
139 |
Q |
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| T |
44460730 |
gagccttgtgtgggtttaaagatttcgaaacagccaagcagttgatccttaaaatgattgcagacagtctacatccttcaatatatgatatcagtataat |
44460829 |
T |
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| Q |
140 |
tattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatacatttgtgatcctcttatgttt |
239 |
Q |
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| T |
44460830 |
tattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtatgggtttttacatttgtaatcctcttatgttt |
44460929 |
T |
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| Q |
240 |
ggttttacacattcaaagggtttgttacatat |
271 |
Q |
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| T |
44460930 |
ggtttcccacgttcaaaaggtatgctacatat |
44460961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 40 - 271
Target Start/End: Original strand, 44468263 - 44468494
Alignment:
| Q |
40 |
gagccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagacaatcaacgtccatcaatatatgttatcaatataat |
139 |
Q |
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|||||||||||||||||||| |||| ||| |||||||| ||||||||||||||||||||||||||| || || ||| |||||||||| ||||| |||||| |
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| T |
44468263 |
gagccttgtgtgggtttaaagatttcgaaacagccaagcagttgatccttaaaatgattgcagacagtctacatccttcaatatatgatatcagtataat |
44468362 |
T |
|
| Q |
140 |
tattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatacatttgtgatcctcttatgttt |
239 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |||||||||||||| |
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| T |
44468363 |
tattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtatgggtttttacatttgtaatcctcttatgttt |
44468462 |
T |
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| Q |
240 |
ggttttacacattcaaagggtttgttacatat |
271 |
Q |
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| T |
44468463 |
ggtttcccacgttcaaaaggtatgctacatat |
44468494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 117 - 256
Target Start/End: Original strand, 46359606 - 46359745
Alignment:
| Q |
117 |
tcaatatatgttatcaatataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtat |
216 |
Q |
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|||||||| | ||||| |||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | | |
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| T |
46359606 |
tcaatatacgatatcagtataattattactgcctatgttaatgctggggaagtcggacaggttttggagatggtgatgctattggaaagtatgggttttt |
46359705 |
T |
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| Q |
217 |
acatttgtgatcctcttatgtttggttttacacattcaaa |
256 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||| |
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| T |
46359706 |
acatttgtaatcctcttatgtttggtttgacacattcaaa |
46359745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 41 - 208
Target Start/End: Complemental strand, 40180166 - 40179993
Alignment:
| Q |
41 |
agccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagacaatc------aacgtccatcaatatatgttatcaat |
134 |
Q |
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|||||||||| ||||||| |||| || ||||||||| |||||||| ||||||||||||||||| || | ||||| |||| | | ||| ||||| |
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| T |
40180166 |
agccttgtgtcagtttaaagattttgatgcagccaagcagttgatctttaaaatgattgcagacggtccgctacagcgtccttcaaaagaagttttcaat |
40180067 |
T |
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| Q |
135 |
ataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtat |
208 |
Q |
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| T |
40180066 |
gtgattattaagacctatgttgatgctagggaaatcggacaagctttggagatggtgatgctattggaaagtat |
40179993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 38604576 - 38604490
Alignment:
| Q |
133 |
atataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtataca |
219 |
Q |
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|||||||||||| |||| |||||||||| |||||| ||||| || ||||||||||||| |||||||||||||||| ||| |||||| |
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| T |
38604576 |
atataattattagtgcctgtgttaaagctagggaaaccggacgggctttggagatggtgttgctattggaaagtataggtttataca |
38604490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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