View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4764-Insertion-11 (Length: 227)
Name: NF4764-Insertion-11
Description: NF4764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4764-Insertion-11 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 68 - 227
Target Start/End: Original strand, 2287785 - 2287944
Alignment:
| Q |
68 |
attaattcgactatgagcctcacctcgcctatgaacgagaaaatgtatgttatcaattctactataaaaaatggcgtcgttacctcctttgttacaaata |
167 |
Q |
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| T |
2287785 |
attaattcgactatgagcctcacctcggctatgaacgagaaaatgtatgttatcaattctactataaaaaatggcctcgttacctcctttgttacaaata |
2287884 |
T |
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| Q |
168 |
aagtgtatctcaaaattcactctcaagagtagatcataaacttaataatatttatccaat |
227 |
Q |
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| T |
2287885 |
aagtgtatctcaaaattcactctcaagagtaaatcataaatttaataatatttatccaat |
2287944 |
T |
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Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 2287695 - 2287786
Alignment:
| Q |
8 |
tgcacaagcttcgtgaaatgatcgggacattttttgtcactggaaatagcactactcttgattaattcgactatgagcctcacctcgcctat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2287695 |
tgcacaagcttcgtgaaatgatcgggacattttttgtcgctggaaatagcactactcttgattaattcgactatgagcctcacctcggctat |
2287786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 2262634 - 2262734
Alignment:
| Q |
65 |
ttgattaattcgactatgagcctcacctcg-cctatgaacgagaaaatgtatgttatcaattctactataaaa-----aatggcgtcgttacctcctttg |
158 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||| |||| ||||||| |||||||| ||||||||| |||||||||||||||||||||| |
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| T |
2262634 |
ttgattaattcgactatgagcctctcctcggcctatgaacgtgaaa-tgtatgtcatcaattcgactataaaaaaaaaaatggcgtcgttacctcctttg |
2262732 |
T |
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| Q |
159 |
tt |
160 |
Q |
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|| |
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| T |
2262733 |
tt |
2262734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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