View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4764-Insertion-2 (Length: 905)
Name: NF4764-Insertion-2
Description: NF4764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4764-Insertion-2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 645; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 88 - 886
Target Start/End: Original strand, 33522183 - 33522989
Alignment:
| Q |
88 |
aggaggacaaaacatgttgctctttagcagtgaacatattatatactctttttaccatgtagccatgttcaacaatatatttccaattctaacttctttt |
187 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
33522183 |
aggaggacaaaacatgttgctcttcagcagtgaacatattatagactctttttaccatgtagccatgttcaacaacatatttccaatcctaacttctttt |
33522282 |
T |
|
| Q |
188 |
cagaatacaccttaattacctcgatgaatccaactaattttacgagctttctcccccaccaacaaaaaatgatttaaaaagggattcaatctgcatgtgc |
287 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33522283 |
cagaatacaccttaattaccccgatgaatccaactaattttacgagcttcctcccccaccaacaaaaaatgatttaaaaagggattcaatctgcatgtgg |
33522382 |
T |
|
| Q |
288 |
acgcctcgtagaaggaaagaaaataaacgagaagtgaagacatgacatatttaagcatgacaagtcgaccaccacccatggaaatttttcactcttccaa |
387 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33522383 |
acacctcgtagaaggaaagaaaataaacgagaagtgaagacatgacatatttaagcatgacaagtcgaccaccacccatggaaattttttactcttccaa |
33522482 |
T |
|
| Q |
388 |
ttagataatctttttataatgttctcatttaacgagagagctaaaacaacaaacaccgagaattgccaccaataagaagacttaaatagacaaacaaaat |
487 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
33522483 |
ttatataatctttttataatgttctcatttaacgagagagctaaaacaacaaacaccgagaattgccaccaataggaagatccaaatagacaaacaaaat |
33522582 |
T |
|
| Q |
488 |
gagacctattttacggtttaaaagaatacattttattgaaagaagtttaaaagaatgcatgattaccaaaagaaaaataat-------aatgnnnnnnnn |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33522583 |
gagacctattttacggtttaaaagaatacattttattgaaagaagtttaaaagaatgcatgattaccaaaagaaaaataataatgaaaaatgaaaaaaaa |
33522682 |
T |
|
| Q |
581 |
ttataattggatcaataaattattttttcaatcattcattgaatgataaatcactacaagtgaagtgatggagctacgcaattttgatgacaaaaaatct |
680 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33522683 |
ttataattggatcaataaattattttttcaatcattcattgaatgataaatcactacaagtgaagtgatggagctacgcaattttgatgacaaaaaatct |
33522782 |
T |
|
| Q |
681 |
agtattttaaagttaggtgacttttagggtgcacagattgttaaattcgtgtacccatacacaaacacattattaaccttagatttattcttttgaaatt |
780 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33522783 |
agtattttaaagttaggtgacttttagggtgtacatattgttaaatttgtgtacccatacacaaacacattattaaccttagatttgctcttttgaaatt |
33522882 |
T |
|
| Q |
781 |
gaatagtttagatgtagtgatgagatgtgacatgatatgtagagtacaaaagcttaacaaattgggtctt-nnnnnnnnttatatttttggaatgcattt |
879 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
33522883 |
gaatagtttagatgtagtgatgagatgtgacatgatatgtagagtacaaaagcttaacaaattaggtcttaaaaaaaaattatatttttggaatgcattt |
33522982 |
T |
|
| Q |
880 |
tttcatt |
886 |
Q |
| |
|
||||||| |
|
|
| T |
33522983 |
tttcatt |
33522989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 33522070 - 33522152
Alignment:
| Q |
8 |
taaagcactacgataaacaaaatgtcttttctctgaatccttttattaagaaaccaccacacaaataaataaactttgagagg |
90 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33522070 |
taaagcactacgataaacaaaatgttttttctcggaatccttttattaagaaaccaccacacaaataaataaactttgagagg |
33522152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 696 - 802
Target Start/End: Complemental strand, 14017191 - 14017085
Alignment:
| Q |
696 |
ggtgacttttagggtgcacagattgttaaattcgtgtacccatacacaaacacattattaaccttagatttattcttttgaaattgaatagtttagatgt |
795 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||||||||||||| | ||| ||||||||| | || |||| |
|
|
| T |
14017191 |
ggtgacttttagggtgcacaaattgttaaatttgtgtacccatacacaaacatacctttaaccttagatttactatttaaaaattgaatggcttggatgc |
14017092 |
T |
|
| Q |
796 |
agtgatg |
802 |
Q |
| |
|
||||||| |
|
|
| T |
14017091 |
agtgatg |
14017085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 603 - 643
Target Start/End: Original strand, 52018107 - 52018147
Alignment:
| Q |
603 |
ttttttcaatcattcattgaatgataaatcactacaagtga |
643 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
52018107 |
ttttttcagtcattcattgaatgataaatcactacaagtga |
52018147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 7e-67; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 696 - 886
Target Start/End: Original strand, 47891725 - 47891912
Alignment:
| Q |
696 |
ggtgacttttagggtgcacagattgttaaattcgtgtacccatacacaaacacattattaaccttagatttattcttttgaaattgaatagtttagatgt |
795 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| |
|
|
| T |
47891725 |
ggtgacttttagggtgcacaaattgttaaatttgtgtgcccatacacaaacacattattaaccttagatttattcttttgaaattgaatggattggatgt |
47891824 |
T |
|
| Q |
796 |
agtgatgagatgtgacatgatatgtagagtacaaaagcttaacaaattgggtcttnnnnnnnnttatatttttggaatgcattttttcatt |
886 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47891825 |
agtgatgagatgtgacatgatatgtagggtacaaaagcttaataaattgggtctt---aaaaattatatttttggaatgcattttttcatt |
47891912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 718 - 886
Target Start/End: Original strand, 21014755 - 21014923
Alignment:
| Q |
718 |
ttgttaaattcgtgtacccatacacaaacacattattaaccttagatttattcttttgaaattgaatagtttagatgtagtgatgagatgtgacatgata |
817 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||||||||||||||| |||| ||||||||||||||||| |||| ||||||||||||||||| ||||||||| |
|
|
| T |
21014755 |
ttgttaaatttgtgtatctatacacaaacacattattaaccttaaatttgttcttttgaaattgaatggtttggatgtagtgatgagatgcgacatgata |
21014854 |
T |
|
| Q |
818 |
tgtagagtacaaaagcttaacaaattgggtcttnnnnnnnnttatatttttggaatgcattttttcatt |
886 |
Q |
| |
|
| || ||||||||||||||| |||||||||||| ||| ||||||| |||||||||||||||| |
|
|
| T |
21014855 |
tatacagtacaaaagcttaataaattgggtcttaaaatattttaaatttttgaaatgcattttttcatt |
21014923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 709 - 765
Target Start/End: Complemental strand, 47892503 - 47892447
Alignment:
| Q |
709 |
gtgcacagattgttaaattcgtgtacccatacacaaacacattattaaccttagatt |
765 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
47892503 |
gtgcacaaattgtaaaatttgtgtacccatacacaaacacatttctaacctttgatt |
47892447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 9e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 696 - 886
Target Start/End: Complemental strand, 12299320 - 12299132
Alignment:
| Q |
696 |
ggtgacttttagggtgcacagattgttaaattcgtgtacccatacacaaacacattattaaccttagatttattcttttgaaattgaatagtttagatgt |
795 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | ||||| |
|
|
| T |
12299320 |
ggtgacttttagggtgcacaaattgttaaatttatatacccatacacaaacacattattaaccttagatttgttcttttgaaattgaatggtgtggatgt |
12299221 |
T |
|
| Q |
796 |
agtgatgagatgtgacatgatatgtagagtacaaaagcttaacaaattgggtcttnnnnnnnnttatatttttggaatgcattttttcatt |
886 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||||||||| ||||| |||||| || ||||||||||||||||||||||||| |
|
|
| T |
12299220 |
agtgatgacatgcaacatgatatgtagagtac-aaagcttaataaattaggtctt-aaaaaatttgtatttttggaatgcattttttcatt |
12299132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 733 - 886
Target Start/End: Complemental strand, 31226092 - 31225938
Alignment:
| Q |
733 |
acccatacacaaacacattattaaccttagatttattcttttgaaattgaatagtttagatgtagtgatgagatgtgacatgatatgtagagtacaaaag |
832 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||| ||||| ||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31226092 |
acccatacacaaacagattattaaccttaaatttgttcttctgaaattgaatggtttggatatagtgatgagatgatacatgatatgtagagtacaaaag |
31225993 |
T |
|
| Q |
833 |
cttaacaaattgggtctt-nnnnnnnnttatatttttggaatgcattttttcatt |
886 |
Q |
| |
|
|| || |||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
31225992 |
ctcaataaattgggtcttaaattttttttatatttttgaaatgcattttttcatt |
31225938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 745
Target Start/End: Complemental strand, 45601198 - 45601147
Alignment:
| Q |
694 |
taggtgacttttagggtgcacagattgttaaattcgtgtacccatacacaaa |
745 |
Q |
| |
|
||||||||||||| |||||||| || ||||||||||||||| ||||||||| |
|
|
| T |
45601198 |
taggtgacttttaaggtgcacaaatgattaaattcgtgtaccaatacacaaa |
45601147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 700 - 803
Target Start/End: Complemental strand, 43245831 - 43245728
Alignment:
| Q |
700 |
acttttagggtgcacagattgttaaattcgtgtacccatacacaaacacattattaaccttagatttattcttttgaaattgaatagtttagatgtagtg |
799 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||| | | |||| ||| |||||| | ||| |||||||||| | || ||||| ||| |
|
|
| T |
43245831 |
acttttagggtgcacaaattgttaaatttgtgtacccatacacaaacaaacttttaatcttggatttactatttagaaattgaatggcttggatgtggtg |
43245732 |
T |
|
| Q |
800 |
atga |
803 |
Q |
| |
|
|||| |
|
|
| T |
43245731 |
atga |
43245728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 698 - 747
Target Start/End: Original strand, 43244865 - 43244914
Alignment:
| Q |
698 |
tgacttttagggtgcacagattgttaaattcgtgtacccatacacaaaca |
747 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
43244865 |
tgacttttagggtatacaaattgttaaatttgtgtacccatacataaaca |
43244914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 696 - 802
Target Start/End: Complemental strand, 41019093 - 41018987
Alignment:
| Q |
696 |
ggtgacttttagggtgcacagattgttaaattcgtgtacccatacacaaacacattattaaccttagatttattcttttgaaattgaatagtttagatgt |
795 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||| || | |||||||| |||||| | ||| ||||||||| | || ||||| |
|
|
| T |
41019093 |
ggtgacttttagggtgcacaaattgttaaatttgtgtacccatacacaagcaaacctttaaccttggatttactatttaaaaattgaatggcttggatgt |
41018994 |
T |
|
| Q |
796 |
agtgatg |
802 |
Q |
| |
|
|||||| |
|
|
| T |
41018993 |
ggtgatg |
41018987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 694 - 744
Target Start/End: Complemental strand, 18850551 - 18850501
Alignment:
| Q |
694 |
taggtgacttttagggtgcacagattgttaaattcgtgtacccatacacaa |
744 |
Q |
| |
|
|||||| |||||| ||| |||| ||||||||||| |||||||||||||||| |
|
|
| T |
18850551 |
taggtggcttttaaggtacacaaattgttaaatttgtgtacccatacacaa |
18850501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 603 - 643
Target Start/End: Original strand, 18058070 - 18058110
Alignment:
| Q |
603 |
ttttttcaatcattcattgaatgataaatcactacaagtga |
643 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18058070 |
ttttttcagtcattcattgaatgataaatcactacaagtga |
18058110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 603 - 639
Target Start/End: Complemental strand, 45724986 - 45724950
Alignment:
| Q |
603 |
ttttttcaatcattcattgaatgataaatcactacaa |
639 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45724986 |
ttttttcaatcattcattaaatgataaatcactacaa |
45724950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 744
Target Start/End: Complemental strand, 37349964 - 37349914
Alignment:
| Q |
694 |
taggtgacttttagggtgcacagattgttaaattcgtgtacccatacacaa |
744 |
Q |
| |
|
|||||| ||||||||||||||| |||| |||||| |||||||||||||||| |
|
|
| T |
37349964 |
taggtggcttttagggtgcacaaattgataaatttgtgtacccatacacaa |
37349914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University