View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4764-Insertion-3 (Length: 886)

Name: NF4764-Insertion-3
Description: NF4764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4764-Insertion-3
NF4764-Insertion-3
[»] chr2 (9 HSPs)
chr2 (8-585)||(32444599-32445175)
chr2 (622-869)||(32445215-32445463)
chr2 (9-168)||(32437631-32437793)
chr2 (353-463)||(32438210-32438325)
chr2 (496-574)||(32438373-32438451)
chr2 (292-361)||(32437977-32438046)
chr2 (623-712)||(32438472-32438561)
chr2 (754-793)||(28037314-28037353)
chr2 (756-834)||(27477336-27477414)
[»] chr1 (2 HSPs)
chr1 (754-834)||(6017709-6017789)
chr1 (754-796)||(799665-799707)
[»] chr6 (1 HSPs)
chr6 (738-793)||(25337790-25337845)
[»] chr5 (1 HSPs)
chr5 (759-885)||(11192502-11192629)
[»] chr7 (1 HSPs)
chr7 (751-880)||(3861076-3861206)


Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 8 - 585
Target Start/End: Original strand, 32444599 - 32445175
Alignment:
Q  8 gcaatatatttgatcatgtcacgtaaaagtagttcactactaacctttttagtactcatcatagatgagaattttggaaaagttctaccctcagaactca 107  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||||||    
T  32444599 gcaatagatttgatcatgtcacgtaaaagtagttcactactaacctttttaggactcat---agatgagaattttggaaaagttctaccctcagaactca 32444695  T
Q  108 taactaatggaataataattaagaaaagaatcaatgctcttgacatcattgtagtggccatgaacttagaaaattacaaataactaaaatgctctatgtt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32444696 taactaatggaataataattaagaaaagaatcaatgctcttgacatcattgtagtggccatgaacttagaaaattacaaataactaaaatgctctatgtt 32444795  T
Q  208 gtgtgtctttgttgcttagaatagcaaggataacctctttatatata--cggacaagtgttgtctaatgtcttgtctctctattagttttggattcctct 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||| || |||||||||||||||    
T  32444796 gtgtgtctttgttgcttagaatagcaaggataacctctttatatatatacagacaagtgttgtctaatgtcttgtctctcttttggttttggattcctct 32444895  T
Q  306 ttctatctattgtgtttaatttgttttgtataagtgacaaatgcatattgttttaaataattggattataagctagttttggttggtttttgctctcatt 405  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32444896 ttctatctattgtgtttaatttgttttgtataaatgacaaatgcatattgttttaaataattggattataagctagttttggttggtttttgctctcatt 32444995  T
Q  406 aaacatgaattgataccgaccaaacccattcataaattgtcctttccacgatagaccttgaattcagatagagtaaagnnnnnnngtaaccccatctgaa 505  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       ||| |||||||||||    
T  32444996 aaacatgaattgataccgaccaaacccattcagaaattgtcctttccacgatagaccttgaattcagatagagtaaagaaaaaaagtagccccatctgaa 32445095  T
Q  506 atttgcatcaatttacataacatgatgaaagtgtttgggttctaatcacatgacagcaactatttccaatcttgtcaagg 585  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32445096 atctgcatcaatttacataacatgatgaaagtgtttgggttctaatcacatgacagcaactatttccaatcttgtcaagg 32445175  T

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Target: chr2; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 622 - 869
Target Start/End: Original strand, 32445215 - 32445463
Alignment:
Q  622 ttcacatgggcatactataattggcttcaaccaacgtgcagtttgttcggttatatattccttaccggaatccaaatgtcgttattatagattattttat 721  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32445215 ttcacatgggcatactataattggcttcaactaacgtgcagtttgttcggttatatattccttaccggaatccaaatgtcgttattatagattattttat 32445314  T
Q  722 ttattac----catgttaactcattcaaacaagtagagtacatcatttaacattattaaaaatgtaaatgatgaatatgccaaaaaattcattaaatcca 817  Q
    |||||||    |||||||||||||||||| ||||||||||||    |||||| | ||||||| |||||||||||||||||||| ||| ||| || |||||    
T  32445315 ttattacaaaacatgttaactcattcaaataagtagagtaca----ttaacactgttaaaaacgtaaatgatgaatatgccaacaaactcactacatcca 32445410  T
Q  818 agttaataatatataactgcaaaactcttac-aataataagataaaattaaag 869  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  32445411 agttaataacatataactgcaaaactcttacaaataataagataaaattaaag 32445463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 32437631 - 32437793
Alignment:
Q  9 caatatatttgatcatgtcacgtaaaagtagttcactactaacctttttagtactcatcatagatgagaattttggaaaagttctaccctcagaactcat 108  Q
    |||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||||||| |||| ||||||||    
T  32437631 caatatttttgatcatgtcacgtaaaagtagctcactaccaacctttttagtactcatcatagatgagaatttaggcaaagttctagcctctgaactcat 32437730  T
Q  109 aactaatg---gaataataattaagaaaagaatcaatgctcttgacatcattgtagtggccat 168  Q
    || |||||   ||| ||||||||| || | ||||||||| ||  ||||| ||||||| |||||    
T  32437731 aaataatggaagaacaataattaaaaagaaaatcaatgccctatacatctttgtagtagccat 32437793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 353 - 463
Target Start/End: Original strand, 32438210 - 32438325
Alignment:
Q  353 ttgttttaa-ataattggattataagctagttttggttggtttttgctctcattaaacatgaattgat------accgaccaaacccattcataaattgt 445  Q
    ||||||||| ||||||||||||  |||||||||||||| ||||||||||||||||||||||||| |||      ||||||||||||||||||||||||||    
T  32438210 ttgttttaatataattggatta--agctagttttggtttgtttttgctctcattaaacatgaatagatgtttaaaccgaccaaacccattcataaattgt 32438307  T
Q  446 cctttccacgatagacct 463  Q
    ||||||||||||||||||    
T  32438308 cctttccacgatagacct 32438325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 496 - 574
Target Start/End: Original strand, 32438373 - 32438451
Alignment:
Q  496 cccatctgaaatttgcatcaatttacataacatgatgaaagtgtttgggttctaatcacatgacagcaactatttccaa 574  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||    
T  32438373 cccacctgaaatttgcatcaatttacatagcatgatgaaagtgtttgggttctaatcacatgacaacacctatttccaa 32438451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 32437977 - 32438046
Alignment:
Q  292 ttttggattcctctttctatctattgtgtttaatttgttttgtataagtgacaaatgcatattgttttaa 361  Q
    |||||||||||||||  ||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  32437977 ttttggattcctcttcatatctgttgtgtataatttgttttgtataagtgacaaatgcatattgttttaa 32438046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 623 - 712
Target Start/End: Original strand, 32438472 - 32438561
Alignment:
Q  623 tcacatgggcatactataattggcttcaaccaacgtgcagtttgttcggttatatattccttaccggaatccaaatgtcgttattataga 712  Q
    |||||||| ||| |||||| ||||| |||| ||| ||| |||| ||||| |||||||||| ||||||||||||| ||||||| |||||||    
T  32438472 tcacatggtcatgctataaatggctccaactaacatgctgttttttcggctatatattccctaccggaatccaactgtcgttcttataga 32438561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 754 - 793
Target Start/End: Complemental strand, 28037353 - 28037314
Alignment:
Q  754 agtacatcatttaacattattaaaaatgtaaatgatgaat 793  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  28037353 agtacatcatttaacatcgttaaaaatgtaaatgatgaat 28037314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 756 - 834
Target Start/End: Complemental strand, 27477414 - 27477336
Alignment:
Q  756 tacatcatttaacattattaaaaatgtaaatgatgaatatgccaaaaaattcattaaatccaagttaataatatataac 834  Q
    ||||||||| |||||| ||||||||||||||||||||| ||| || | | |||  | ||||||||||||| ||| ||||    
T  27477414 tacatcattcaacattgttaaaaatgtaaatgatgaatctgcgaacatactcacaacatccaagttaatagtatttaac 27477336  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 754 - 834
Target Start/End: Complemental strand, 6017789 - 6017709
Alignment:
Q  754 agtacatcatttaacattattaaaaatgtaaatgatgaatatgccaaaaaattcattaaatccaagttaataatatataac 834  Q
    |||||||| || ||| |||||||||||  ||||||||||| ||| || |||||||  | ||||||||||||| ||||||||    
T  6017789 agtacatctttcaacgttattaaaaataaaaatgatgaatctgcaaataaattcacaacatccaagttaatagtatataac 6017709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 754 - 796
Target Start/End: Original strand, 799665 - 799707
Alignment:
Q  754 agtacatcatttaacattattaaaaatgtaaatgatgaatatg 796  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||    
T  799665 agtacatcattcaacatcattaaaaacgtaaatgatgaatatg 799707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 738 - 793
Target Start/End: Complemental strand, 25337845 - 25337790
Alignment:
Q  738 tcattcaaacaagtagagtacatcatttaacattattaaaaatgtaaatgatgaat 793  Q
    |||||||||  | ||||||||||||||||||| || ||||||| ||||||||||||    
T  25337845 tcattcaaattaatagagtacatcatttaacactactaaaaatataaatgatgaat 25337790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 759 - 885
Target Start/End: Complemental strand, 11192629 - 11192502
Alignment:
Q  759 atcatttaacattattaaaaatgtaaatgatgaatatgccaaaaaattcattaaatccaagttaataatatataactgcaaaactcttacaa-taataag 857  Q
    ||||||||| ||  ||||||| ||||||||| ||  |||||| ||||| |  | ||| |||||||||| ||| |||  |||||  ||||||| ||||| |    
T  11192629 atcatttaatatcgttaaaaacgtaaatgataaacctgccaacaaatttacaacatcaaagttaataacatacaacgacaaaatgcttacaaataatacg 11192530  T
Q  858 ataaaattaaagggatcgaaatactcat 885  Q
    ||||| |||||| |||||||||||||||    
T  11192529 ataaatttaaagtgatcgaaatactcat 11192502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 751 - 880
Target Start/End: Complemental strand, 3861206 - 3861076
Alignment:
Q  751 tagagtacatcatttaacattattaaaaatgtaaatgatgaatatgccaaaaaattcattaaatccaagttaataatatataactgcaaaactcttaca- 849  Q
    ||||||||  |||| ||||| | |||||| |||||| |||||||||  || ||| |||| | ||||||||| |||| ||||||  ||||||  | ||||     
T  3861206 tagagtaccccattcaacatcactaaaaacgtaaattatgaatatgtgaacaaactcataacatccaagttgataacatataatggcaaaaagcctacac 3861107  T
Q  850 ataataagataaaattaaagggatcgaaata 880  Q
    |||||| ||||||||||||| || |||||||    
T  3861106 ataatatgataaaattaaagtgaccgaaata 3861076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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