View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4764-Insertion-6 (Length: 774)
Name: NF4764-Insertion-6
Description: NF4764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4764-Insertion-6 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 670; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 8 - 774
Target Start/End: Complemental strand, 8555324 - 8554560
Alignment:
| Q |
8 |
ctaacatcttagccataaaagcgtacgtgtcagcggcttcatcaatctgcagtcaacaacttattagtacagtataacttaccaagacaataacaacgaa |
107 |
Q |
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| T |
8555324 |
ctaacatcttagccataaaagtgtacgtgtcagcggcttcatcaatctgcagtcaacaacttattagtacagtataacttaccaagacaataacaacgaa |
8555225 |
T |
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| Q |
108 |
gcgaacaagaaaacaaattagtagtatattacaattatctgtgtcggacgcccagctccatgtccagctttgcattcaattcgagcaattattgggtttg |
207 |
Q |
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| T |
8555224 |
gctaacaagaaaacaaattagtagtatattacaattttctgtgtcggacgcccagctccatgtccagctttgcattcaattcgagcaattattgggttcg |
8555125 |
T |
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| Q |
208 |
tctgcggacttttatctaggccagtaacaaggacatactgcatggtctggtctgctcaatatttggatttggaatacaagttaaaagtttgcagcttcca |
307 |
Q |
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| T |
8555124 |
tctgcggacttttatctaggctagtaacaaggacatactgcatggtctggtctgctcaatatttggatttggaatacaagttaaaagtttgcagcttcca |
8555025 |
T |
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| Q |
308 |
aaataaattcataaattatggaaagcatactaaccgctaacagcttcaatgaatgcaatggcacaacacgatcatcatgatcagctatcaatacaatagc |
407 |
Q |
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| T |
8555024 |
aaataaattcataaattatggaaagcatactaaccgctaacagcttcaatgaatgcaatggcacaacacgatcatcatgatcagctatc-----aatagc |
8554930 |
T |
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| Q |
408 |
attgttggtggatactgaattgacttatctggatgttgctcccatggtctccggacattatgcaatggtgagtacctaaaaca----acttaactattat |
503 |
Q |
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| T |
8554929 |
attgttggtggatactgaattgacttatctggatgttgctcccatggtctccagacattatgcaatggtgagtacctaaaacaacttacttaactattat |
8554830 |
T |
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| Q |
504 |
cataagatatcacatcacatcacaaatagtcccctacatcaaagtcttcaacattatagtttcaacttaatatttaatgacaggtttaaccaaactcact |
603 |
Q |
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| T |
8554829 |
cataagatatcacatcacatcacaaatagtcccctacatcaaagtctgcaaaattatagtttcaacttaatatttaatgacaggtttaaccaaactcact |
8554730 |
T |
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| Q |
604 |
tgattagccaatgaaattcttcctccttgtcaggagaaccaaattctgaagtccaaccatgacccgaattacaaaacaccaaattaattttcattattac |
703 |
Q |
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| T |
8554729 |
tgattagccaatgaaattcttcctctttgtcaggagaaccaaattctgaagtccaagcatgacctgaattacaaaacaccaaattaattttcattattac |
8554630 |
T |
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| Q |
704 |
tatcacaaaataacaaatgaatacacatcaagacaaacctatagtgaatttctggaaccgtaacatgtcca |
774 |
Q |
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| T |
8554629 |
tatcacaaaataacagatgaatacacatcaagacaaacctata-tgaatttgtggaactgtaacatgtcca |
8554560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 321 - 511
Target Start/End: Complemental strand, 8559533 - 8559349
Alignment:
| Q |
321 |
aattatggaaagcatactaaccgctaacagcttcaatgaatgcaatggcacaacacgatcatcatgatcagctatcaatacaatagcattgttggtggat |
420 |
Q |
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| T |
8559533 |
aattatgggaagcagacaaaccgccaatagcttcaatgaatgtaatggcacaacacgatcatcatgatcagctgt-----caatagcattgttgatgggt |
8559439 |
T |
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| Q |
421 |
actgaattgacttatctggatgttgctcccatggtctccggacattatgcaatggtgagtacctaaaacaacttaactattatcataagat |
511 |
Q |
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| T |
8559438 |
actgaatcgacttatctggatgctgttcccatggtctccggacattatgcaatggtgagtacctgaaacaccat-agtattatcataagat |
8559349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 133 - 256
Target Start/End: Complemental strand, 8559739 - 8559616
Alignment:
| Q |
133 |
atattacaattatctgtgtcggacgcccagctccatgtccagctttgcattcaattcgagcaattattgggtttgtctgcggacttttatctaggccagt |
232 |
Q |
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| T |
8559739 |
atattacagttttctgtgtcggacgcccagctccatgtccagccttgcattcaattcgagcaattattgggttcgtctggggacttttatccaggctagt |
8559640 |
T |
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| Q |
233 |
aacaaggacatactgcatggtctg |
256 |
Q |
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| T |
8559639 |
aacaaggacatactgcaaggtctg |
8559616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 561 - 721
Target Start/End: Complemental strand, 8559263 - 8559103
Alignment:
| Q |
561 |
agtttcaacttaatatttaatgacaggtttaaccaaactcacttgattagccaatgaaattcttcctccttgtcaggagaaccaaattctgaagtccaac |
660 |
Q |
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| T |
8559263 |
agtttcatcttactatttaacgataggtttaacgaaactcacttgattagccaatgaaattcttcttccttgtcagaacagccaaaatctgaggtccaag |
8559164 |
T |
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| Q |
661 |
catgacccgaattacaaaacaccaaattaattttcattattactatcacaaaataacaaat |
721 |
Q |
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| T |
8559163 |
catgacctgaataacaaaacaccaaatcaatatacaacattacttttacaaaataacaaat |
8559103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 8559861 - 8559800
Alignment:
| Q |
8 |
ctaacatcttagccataaaagcgtacgtgtcagcggcttcatcaatctgcagtcaacaactt |
69 |
Q |
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| T |
8559861 |
ctaacatcttagccataaaaccataccggtcagcggcttcatcaatctgcagtcaacaactt |
8559800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 736 - 774
Target Start/End: Complemental strand, 8559074 - 8559036
Alignment:
| Q |
736 |
acaaacctatagtgaatttctggaaccgtaacatgtcca |
774 |
Q |
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| T |
8559074 |
acaaacctatagtgaatttatggaaccgtaacatgtcca |
8559036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 336 - 487
Target Start/End: Complemental strand, 53740427 - 53740281
Alignment:
| Q |
336 |
actaaccgctaacagcttcaatgaatgcaatggcacaacacgatcatcatgatcagctatcaatacaatagcattgttggtggatactgaattgacttat |
435 |
Q |
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| T |
53740427 |
actaaccgccaatagcttcaatgagtgtagtggcacaactcgatcatcatgatctgccgttaa--caa---catagttgatgggtattgaattgacttgt |
53740333 |
T |
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| Q |
436 |
ctggatgttgctcccatggtctccggacattatgcaatggtgagtacctaaa |
487 |
Q |
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| T |
53740332 |
caggatgctgttcccaaggtcgccggacattatgcaatggtgagtacctaaa |
53740281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 595 - 667
Target Start/End: Complemental strand, 53739171 - 53739099
Alignment:
| Q |
595 |
aaactcacttgattagccaatgaaattcttcctccttgtcaggagaaccaaattctgaagtccaaccatgacc |
667 |
Q |
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| T |
53739171 |
aaactcacttgattagccaatgaaactcttcctccttatctgcacaaccataatctgaggtccaagcatgacc |
53739099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 53740787 - 53740703
Alignment:
| Q |
136 |
ttacaattatctgtgtcggacgcccagctccatgtccagctttgcattcaattcgagcaattattgggtttgtctgcggactttt |
220 |
Q |
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| T |
53740787 |
ttaccattttctttgttggacgacccgctccatgtccagctttgcagtcaatgcgaccaattatagggtttgtttggggactttt |
53740703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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