View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4764-Insertion-7 (Length: 710)
Name: NF4764-Insertion-7
Description: NF4764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4764-Insertion-7 |
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| [»] scaffold0244 (1 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 6e-79; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 68 - 313
Target Start/End: Original strand, 4183706 - 4183951
Alignment:
| Q |
68 |
ggcggtcgtggttggaggtggacaggcgaaggtgcttcatggcaaatttggaatcaatggaaataagagaattccatgacttgcaaacgcaactgagttt |
167 |
Q |
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|||||||||||||||||||||||| |||||||| ||| |||| |||||||||||| ||| |||||||||||||| |||||||||||||||| ||||| |
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| T |
4183706 |
ggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttg |
4183805 |
T |
|
| Q |
168 |
aaggaggtgtttcacagggagaagggataagatttctgccacaagatcaaatggaagaaatggaggagagttggtgggaggcagtggtgttagggttttg |
267 |
Q |
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|||||||||||||||||||||| | ||| |||||||||||||||||| |||||||| || ||||||||||| |||||||||||| ||||||||||| || |
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| T |
4183806 |
aaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttagtgggaggcagttgtgttagggttctg |
4183905 |
T |
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| Q |
268 |
gttgaggttcctcctcgtttgcaatctgtcgtcgtcgtcatatcaa |
313 |
Q |
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| T |
4183906 |
gttgaggttcctcctcgtttgcgacctgtcatcgtcgtcatatcaa |
4183951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 68 - 313
Target Start/End: Original strand, 4744545 - 4744790
Alignment:
| Q |
68 |
ggcggtcgtggttggaggtggacaggcgaaggtgcttcatggcaaatttggaatcaatggaaataagagaattccatgacttgcaaacgcaactgagttt |
167 |
Q |
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|||||||||||||||||||||||| |||||||| ||| |||| |||||||||||| ||| |||||||||||| | |||||||||||||||| ||||| |
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| T |
4744545 |
ggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattc-aggacttgcaaacgcaacggagttg |
4744643 |
T |
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| Q |
168 |
aaggagg-tgtttcacagggagaagggataagatttctgccacaagatcaaatggaagaaatggaggagagttggtgggaggcagtggtgttagggtttt |
266 |
Q |
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| T |
4744644 |
aaggagggtgtttcacagggagacagcagaggatttctgccacaagatcgaatggaagtaacggaggagagttagtgggaggcagtggtgttagggttct |
4744743 |
T |
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| Q |
267 |
ggttgaggttcctcctcgtttgcaatctgtcgtcgtcgtcatatcaa |
313 |
Q |
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||||||||||||||||||||||| | ||||| ||||||||||||||| |
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| T |
4744744 |
ggttgaggttcctcctcgtttgcgacctgtcatcgtcgtcatatcaa |
4744790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 4183630 - 4183679
Alignment:
| Q |
19 |
gcggaactaaaaatagaggagattgagcatccagataagtggaacaaggg |
68 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4183630 |
gcggaactgaaaatagaggagattgagcatccagataagtagaacaaggg |
4183679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 68 - 225
Target Start/End: Original strand, 51382140 - 51382297
Alignment:
| Q |
68 |
ggcggtcgtggttggaggtggacaggcgaaggtgcttcatggcaaatttggaatcaatggaaataagagaattccatgacttgcaaacgcaactgagttt |
167 |
Q |
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||||||||||||||||||| |||| ||||| |||||| |||| || ||||||||| || |||||| |||||||||||||||| ||||||| ||||| |
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| T |
51382140 |
ggcggtcgtggttggaggttgacaaacgaagttgcttcttggcgaaattggaatcatgagagataagataattccatgacttgcagacgcaacggagttg |
51382239 |
T |
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| Q |
168 |
aaggaggtgtttcacagggagaagggataagatttctgccacaagatcaaatggaaga |
225 |
Q |
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||||||||||||||| ||||| ||| | | |||||||||||| ||||| || |||||| |
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| T |
51382240 |
aaggaggtgtttcacggggagcaggcacaggatttctgccaccagatcgaacggaaga |
51382297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 68 - 264
Target Start/End: Complemental strand, 51857958 - 51857762
Alignment:
| Q |
68 |
ggcggtcgtggttggaggtggacaggcgaaggtgcttcatggcaaatttggaatcaatggaaataagagaattccatgacttgcaaacgcaactgagttt |
167 |
Q |
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|||||||| |||||||||| |||| ||||||||||||||| | |||| ||||||| || ||||||||||||||||||||||| | ||||| ||||| |
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| T |
51857958 |
ggcggtcgaggttggaggttgacaagcgaaggtgcttcatagtgaattcggaatcatgagagataagagaattccatgacttgcagatgcaacggagttg |
51857859 |
T |
|
| Q |
168 |
aaggaggtgtttcacagggagaagggataagatttctgccacaagatcaaatggaagaaatggaggagagttggtgggaggcagtggtgttagggtt |
264 |
Q |
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|||||| | |||||| ||||| || | | ||||||| ||| ||||| || | |||||||||| |||| ||||| |||||| |||||||| ||||| |
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| T |
51857858 |
aaggagatttttcacggggagctggcacagaatttctgtcacgagatcgaacgaaagaaatggaagagaattggtaggaggcggtggtgtttgggtt |
51857762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 51221896 - 51222005
Alignment:
| Q |
73 |
tcgtggttggaggtggacaggcgaaggtgcttcatggcaaatttggaatcaatggaaataagagaattccatgacttgcaaacgcaactgagtttaagga |
172 |
Q |
| |
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||||||||| |||| |||| |||||| |||||| ||||||| || ||||| || ||||||||||||||||||||||| | ||| | ||||| || || |
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| T |
51221896 |
tcgtggttgaaggttgacaagcgaagttgcttcttggcaaaatttaaatcatgagagataagagaattccatgacttgcagatgcagcggagttgaatga |
51221995 |
T |
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| Q |
173 |
ggtgtttcac |
182 |
Q |
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|||||||||| |
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| T |
51221996 |
ggtgtttcac |
51222005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 51763692 - 51763744
Alignment:
| Q |
130 |
ataagagaattccatgacttgcaaacgcaactgagtttaaggaggtgtttcac |
182 |
Q |
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||||||||||||||||||||||| ||||||| ||||| |||||| |||||||| |
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| T |
51763692 |
ataagagaattccatgacttgcagacgcaacagagttgaaggagatgtttcac |
51763744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 25611720 - 25611801
Alignment:
| Q |
93 |
gcgaaggtgcttcatggcaaatttggaatcaatggaaataagagaattccatgacttgcaaacgcaactgagtttaaggagg |
174 |
Q |
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|
||||||||| ||| || |||| |||| |||| | || || |||||||||||||||||||| ||||||| || || ||||||| |
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| T |
25611720 |
gcgaaggtgtttcttgacaaaattgggatcattcgatattagagaattccatgacttgcagacgcaacagaattgaaggagg |
25611801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 225
Target Start/End: Complemental strand, 51782148 - 51781991
Alignment:
| Q |
68 |
ggcggtcgtggttggaggtggacaggcgaaggtgcttcatggcaaatttggaatcaatggaaataagagaattccatgacttgcaaacgcaactgagttt |
167 |
Q |
| |
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|||| |||||||| ||||| |||| ||||| ||| || | || ||||| |||||| ||| |||||||||||||||||||| || || | | |||||| |
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| T |
51782148 |
ggcgatcgtggttagaggttgacaagcgaaagtgttttttagcgaatttagaatcatgggagataagagaattccatgacttacagacacggcggagttt |
51782049 |
T |
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| Q |
168 |
aaggaggtgtttcacagggagaagggataagatttctgccacaagatcaaatggaaga |
225 |
Q |
| |
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|| ||| |||||||| ||||| || | | ||||||||| || ||||| || |||||| |
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| T |
51782048 |
aatgagatgtttcacggggagcagacacaggatttctgcaaccagatcgaacggaaga |
51781991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 358 - 420
Target Start/End: Complemental strand, 16353 - 16291
Alignment:
| Q |
358 |
ttccaaagtgctagtcagacgtattagacctttcttggatgattctattggcactctttaaag |
420 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||||||||||||| ||||||| ||||| |||| |
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| T |
16353 |
ttccaaagtactagttaggcgtattagacctttcttggatgattttattggccctcttcaaag |
16291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 41147 - 41232
Alignment:
| Q |
133 |
agagaattccatgacttgcaaacgcaactgagtttaaggaggtgtttcacagggagaagggataagatttctgccacaagatcaaa |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||| || || |||||| |||||||||||| | ||| |||||| |||||||||||||| |
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| T |
41147 |
agagaattccatgacttgcagacgcaacggaattgtaggaggaatttcacagggagtcgacataggatttcagccacaagatcaaa |
41232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 358 - 435
Target Start/End: Complemental strand, 800 - 723
Alignment:
| Q |
358 |
ttccaaagtgctagtcagacgtattagacctttcttggatgattctattggcactctttaaagttctttcattcctaa |
435 |
Q |
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||||||||| || || ||| |||| | ||||||||||||||||| ||||||| |||| ||| |||||||||||||| |
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| T |
800 |
ttccaaagttcttgtgagatgtatcaaacctttcttggatgattttattggccctctccaaaactctttcattcctaa |
723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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