View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4764-Insertion-9 (Length: 647)

Name: NF4764-Insertion-9
Description: NF4764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4764-Insertion-9
NF4764-Insertion-9
[»] chr3 (1 HSPs)
chr3 (8-644)||(38484250-38484887)


Alignment Details
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 8 - 644
Target Start/End: Original strand, 38484250 - 38484887
Alignment:
Q  8 ggaacaccctgagaagcaaaaacaaatgcagtagtaaatttaaaaatgaaattaaagaaggaagagtggtggagtgggaaatgtgatttgcagttcaagn 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||     
T  38484250 ggaacaccctgagaagcaaaaacaaatgcagtagtaaatttaaaaatgaaattaaagaaag--gagtggtggagtgggaaatgtgatttgcagttcaaga 38484347  T
Q  108 nnnnnngaattggatgattatgataaggaggtgttcatcatgatcatgatgaagaggaaggataatactagaagggtttagagactagagtgatttcttt 207  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  38484348 aaaaa-gaattggatgattatgataaggaggtgttcatcatgatcatgatgaagaggaaggataatactaaaagggtttagagactagagtggtttcttt 38484446  T
Q  208 tgaaataaaggaatgattaggtttgtgaaaaaccaaagtagggagggaatgagatgcatattttgcggtgagtagtgatttcattttgtctgggaaaatg 307  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38484447 tgaaataaaggaatgattaggtttgtgaaaaaccaaagtaggaagggaatgagatgcatattttgcggtgagtaatgatttcattttgtctgggaaaatg 38484546  T
Q  308 aagggggagaggatatgatttttggtgggtata----ttatgtaatgtagtatcattgcttaatggtcatactcatgatgatgatgatcatgatggattc 403  Q
    |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38484547 aagggggagaggatatgatttttggtgggtataagtattatgtaatgtagtatcattgcttaatggtcatactcatgatgatgatgatcatgatggattc 38484646  T
Q  404 ccttcttttacgtgtgcataagtgcttccatttggaattcactttactttttcactcatcattcataatcataccccacagggttatatggatggatcaa 503  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38484647 ccttcttttacgtgtgcataagtgcttccatttggaattcactatactttttcactcatcattcataatcataccccacagggttatatggatggatcaa 38484746  T
Q  504 cttcagcccctctacgttcacgtgcatccacaatcacattcatctttcccaatccttttacagttttactcatcccctnnnnnnnngtaatagtagttac 603  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  38484747 cttcagcccctctacgttcacgtgcattcacaatcacatttatctttcccaatccttttacagttttactcatcccctaaaaaaaagtaatagtagttac 38484846  T
Q  604 tcacaaaattggatgcatgtacataaaattagacatgaatg 644  Q
    ||  |||||||||||||||||||||||||||||||||||||    
T  38484847 tctgaaaattggatgcatgtacataaaattagacatgaatg 38484887  T

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