View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4764_high_10 (Length: 201)
Name: NF4764_high_10
Description: NF4764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4764_high_10 |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 4183455 - 4183624
Alignment:
| Q |
16 |
caaaggaggcaatatcttgaattttcgaatggaagggttacacagaaaagctaaagactcatcgatcctgacacagagcatgccatcacaagaggtaact |
115 |
Q |
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| T |
4183455 |
caaaggaggcaatatcttgaatttacgaatggaagggttacacagaaaagctaaagactcatcgatcctaacacagaccatgccatcacaagtggtaact |
4183554 |
T |
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| Q |
116 |
ctccaaacatagcctcccttaagattaagaatgagaggatggttattgagctgtgtgaaactggtaaagg |
185 |
Q |
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|||| || |||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| |
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| T |
4183555 |
ctcccaatatagtctcccttaagattaagaatcagacgatggttattgagccacttgaaactggtaaagg |
4183624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 4744296 - 4744465
Alignment:
| Q |
16 |
caaaggaggcaatatcttgaattttcgaatggaagggttacacagaaaagctaaagactcatcgatcctgacacagagcatgccatcacaagaggtaact |
115 |
Q |
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| T |
4744296 |
caaaggaggcaatatcttgaatttacgaatggaagggttacacagaaaagctaaagactcatcgatcctaacacagaccatgccatcacaagtggtaact |
4744395 |
T |
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| Q |
116 |
ctccaaacatagcctcccttaagattaagaatgagaggatggttattgagctgtgtgaaactggtaaagg |
185 |
Q |
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|||| || |||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| |
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| T |
4744396 |
ctcccaatatagtctcccttaagattaagaatcagacgatggttattgagccacttgaaactggtaaagg |
4744465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 51858211 - 51858125
Alignment:
| Q |
17 |
aaaggaggcaatatcttgaattttcgaatggaagggttacacagaaaagctaaagactcatcgatcctgacacagagcatgccatca |
103 |
Q |
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| T |
51858211 |
aaaggaggcaatatcttgaattttctaatggaagggttacacaaaagagcagaagatgaatcaatcctaacacagagcatgccatca |
51858125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 51381898 - 51381980
Alignment:
| Q |
17 |
aaaggaggcaatatcttgaattttcgaatggaagggttacacagaaaagctaaagactcatcgatcctgacacagagcatgcc |
99 |
Q |
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| T |
51381898 |
aaaggaggcaatatcttaaattttctaatggaagggttgcataaaagagctaaagattcatctattccaaaacagagcatgcc |
51381980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 51829348 - 51829257
Alignment:
| Q |
16 |
caaaggaggcaatatcttgaattttcgaatggaagggttacacagaaaagctaaagactcatcgatcctgacacagagcatgccatcacaag |
107 |
Q |
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| T |
51829348 |
caaaggaggcaatatcttaaattttctgatggaagggttgcacaagagagctaaagagtaattaaccctaaaacatagcatgccatcacaag |
51829257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 51763375 - 51763411
Alignment:
| Q |
21 |
gaggcaatatcttgaattttcgaatggaagggttaca |
57 |
Q |
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| T |
51763375 |
gaggcaatatcttgaatttcctaatggaagggttaca |
51763411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 771956 - 771999
Alignment:
| Q |
16 |
caaaggaggcaatatcttgaattttcgaatggaagggttacaca |
59 |
Q |
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| T |
771956 |
caaaggaggcaatatcttgaatttttgaatggaagggttccaca |
771999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 2455467 - 2455424
Alignment:
| Q |
16 |
caaaggaggcaatatcttgaattttcgaatggaagggttacaca |
59 |
Q |
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||||||||||||||||||||||| || |||||||||||| |||| |
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| T |
2455467 |
caaaggaggcaatatcttgaattctccaatggaagggttccaca |
2455424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 13497829 - 13497790
Alignment:
| Q |
20 |
ggaggcaatatcttgaattttcgaatggaagggttacaca |
59 |
Q |
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| T |
13497829 |
ggaggcaatatcttgaattttctaatggaagggttccaca |
13497790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 2491724 - 2491676
Alignment:
| Q |
16 |
caaaggaggcaatatcttgaattttcgaatggaagggttacacagaaaa |
64 |
Q |
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| T |
2491724 |
caaaggaggcaataacttaaactttctaatggaagggttccacagaaaa |
2491676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 88752 - 88709
Alignment:
| Q |
16 |
caaaggaggcaatatcttgaattttcgaatggaagggttacaca |
59 |
Q |
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|||||||||||||| |||||||||||| ||||||||||| |||| |
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| T |
88752 |
caaaggaggcaataccttgaattttcggatggaagggttccaca |
88709 |
T |
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