View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4764_high_4 (Length: 264)
Name: NF4764_high_4
Description: NF4764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4764_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 95 - 250
Target Start/End: Complemental strand, 47001034 - 47000880
Alignment:
| Q |
95 |
tatttatttattcacatcctcttcttaagaagataaaattgatctcttatattatgcttaatggttctcctattttatttaaattcacgaaaatagtcct |
194 |
Q |
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| T |
47001034 |
tatttatttattcacatcctcttcttaagaagataaaattgatctcttatattatgcttaatggttctcctatttta-ttaaattcacgaaaatagtcct |
47000936 |
T |
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| Q |
195 |
caatcgaactttttggtgtctttattttcacatttattgtaattttagtcccaacc |
250 |
Q |
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| T |
47000935 |
caatcgaactttttggtgtctttattttcacatttattgtaattttagtcccaacc |
47000880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 47001102 - 47001034
Alignment:
| Q |
1 |
tcaatccctgtaacaattttgacaagtccattacactcttagatttcatcattcacagtaactttttat |
69 |
Q |
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| T |
47001102 |
tcaatccctgtagcaattttgacaagtccattacactcttagatttcatcattcacagtaaatttttat |
47001034 |
T |
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