View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4764_low_1 (Length: 766)
Name: NF4764_low_1
Description: NF4764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4764_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 124 - 701
Target Start/End: Complemental strand, 8481283 - 8480713
Alignment:
| Q |
124 |
gacgttttgtatctatctaattatgatacatattccatcatgtaattatgaggcatgagccaaaaaatataacagaactaataatgtttaacaaaacaaa |
223 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8481283 |
gacgttttgtatctatctaattatgatacatattccatcatgtaattatgaggcatgagccaaaaaatataacagaactaataatgtttaacaaaa-aaa |
8481185 |
T |
|
| Q |
224 |
aatataactagaacaacatgatgttatttggttggtaattatgtgagcatcaaacacatgatatgattgtatttatcattttaatctggctcaatatctt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
8481184 |
aatataactagaacaacatgatgttatttggttggtaattatgtgaacatcaaacacatgatataattgtatttatcattttaatccggctcaatatctt |
8481085 |
T |
|
| Q |
324 |
atcatgcttctaacaatagcatgctgaacaaagtttcttttatgatcacaacttcttacaggccattcaactttaatcttaactttgactcatcacttgt |
423 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8481084 |
atcatgcttctaacaatagcatgctgaacaaagtttcttttatgatcacaacttctaacaggccattcaactttaatcttaact--gactcatcacttgt |
8480987 |
T |
|
| Q |
424 |
ttcaattaaatcttctggtttgggtggacggactgtgacaaatgcagtggccaaaataacatttttctaatgtcttgtggtgagtaggacatatattgaa |
523 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8480986 |
ttcaattaaatcttctggtttgggtggac----tgtgacaaatgcagtggccaaaataacatttttctaatgtcttgtggtgagtaggacatatattgaa |
8480891 |
T |
|
| Q |
524 |
tatgacaacaaaaacagtgattatttcagccttcatgaaaattaaatctaaataggttcagagcagatctattatgccataaatgagttcaagagtccta |
623 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| |||| |
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|
| T |
8480890 |
tatgacaacaaaaacagtgattaattcagccttcatgaaaattaaatctaaacaggttcagagtagatttattatgccataaatgagttcaagagcccta |
8480791 |
T |
|
| Q |
624 |
gttgtccatggtttggcagatggagcttcattcatcgactccaatcgatgtccagctggagctggaaagaattactca |
701 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| | |||||||||| ||||| ||||||||||||||||||| ||||| |
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|
| T |
8480790 |
gttgtcaatggtgtggcagatggagcttcattaagagactccaatctatgtctagctggagctggaaagaataactca |
8480713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 124 - 701
Target Start/End: Original strand, 8349834 - 8350400
Alignment:
| Q |
124 |
gacgttttgtatctatctaattatgatacatattccatcatgtaattatgaggcatgagccaaaaaatataacagaactaataatgtttaacaaaacaaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8349834 |
gacgttttgtatctatctaattatgatacatattccatcatttaattatgaggcatgagccaaaaaatataacagaactaataatgtttaacaaaa-aaa |
8349932 |
T |
|
| Q |
224 |
aatataactagaacaacatgatgttatttggttggtaattatgtgagcatcaaacacatgatatgat-----tgtatttatcattttaatctggctcaat |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
8349933 |
aatataactagaaca-----------tttggttggtaattctgtgagcatcaaacacatgatatgatatgattgtatttatcattttaatccggctcaat |
8350021 |
T |
|
| Q |
319 |
atcttatcatgcttctaacaatagcatgctgaacaaagtttcttttatgatcacaacttcttacaggccattcaactttaatcttaactttgactcatca |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
8350022 |
atcttatcatgcttctaacaatagcatgctgaacaaagtttcttttatgatcacaacttctaactggccattcaactttaatcttaactttgactcatca |
8350121 |
T |
|
| Q |
419 |
cttgtttcaattaaatcttctggtttgggtggacggactgtgacaaatgcagtggccaaaataacatttttctaatgtcttgtggtgagtaggacatata |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
8350122 |
cttgtttcaattaaatcttctggtttgggtggac----tgtgacaaatgcagtggccaaaataacatttttctaatgtcttgtggagagtaggacatata |
8350217 |
T |
|
| Q |
519 |
ttgaatatgacaacaaaaacagtgattatttcagccttcatgaaaattaaatctaaataggttcagagcagatctattatgccataaatgagttcaagag |
618 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8350218 |
ttgaatatgacaacaaaaacagtgattaattcagccttcatgaaaattaaatctaaataggttcagagcagatctattatgccataaatgagttcaagag |
8350317 |
T |
|
| Q |
619 |
tcctagttgtccatggtttggcagatggagcttcattcatcgactccaatcgatgtccagctggagctggaaagaattactca |
701 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8350318 |
ccctagttgtccatggtttggcagatggagctttattcatcgactccaatcgatgtccagctggagctggaaagaataactca |
8350400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 8482788 - 8482678
Alignment:
| Q |
16 |
acatcatcataagtacaaagtatttccaatgttccagatcgccaccactagtctggaaagat-agtgagtttgttatgaacaacttttgggatgttccta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8482788 |
acatcatcataagtacaaagtatttccaatgttccagatcaccaccactagtctggaaagataagtgagtttgttatgaacaacttttgggatgttccta |
8482689 |
T |
|
| Q |
115 |
aatagaagaga |
125 |
Q |
| |
|
||||||||||| |
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|
| T |
8482688 |
aatagaagaga |
8482678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 8355517 - 8355597
Alignment:
| Q |
45 |
tgttccagatcgccaccactagtctggaaagatagtgagtttgttatgaacaacttttgggatgttcctaaatagaagaga |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8355517 |
tgttccagatcgccaccactagtctggaaagatagtgagtttgttatgaacaacttttgggatgttcctaaatagaagaga |
8355597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 124 - 325
Target Start/End: Original strand, 8450856 - 8451052
Alignment:
| Q |
124 |
gacgttttgtatctatctaattatgatacatattccatcatgtaattatgaggcatgagccaaaaaatataacagaactaataatgtttaacaaaacaaa |
223 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |||||||||||||| | ||||| ||||||||||||| ||||| ||| || ||||| ||| | |
|
|
| T |
8450856 |
gacgttttgtatctatctaaatataatacatatttcatcatgtaattatcatgcatgtaccaaaaaatataatagaacaaatcatatttaaggaaa---a |
8450952 |
T |
|
| Q |
224 |
aatataactagaacaacatgatgttatttggttggtaattatgtgagcatcaaacacatgatatgattgtatttatcattttaatctggctcaatatctt |
323 |
Q |
| |
|
| ||||| ||||||||||| |||||||||||||| | | |||||||||| ||||| ||||||||||||||||||| ||||| ||| ||||||||||||| |
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|
| T |
8450953 |
agtataa-tagaacaacataatgttatttggttgttg-tcatgtgagcattaaacatatgatatgattgtatttattatttttatccggctcaatatctt |
8451050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 124 - 325
Target Start/End: Complemental strand, 8428581 - 8428385
Alignment:
| Q |
124 |
gacgttttgtatctatctaattatgatacatattccatcatgtaattatgaggcatgagccaaaaaatataacagaactaataatgtttaacaaaacaaa |
223 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |||||||||||||| | ||||| |||||| |||| | ||||| ||| || ||||| ||| | |
|
|
| T |
8428581 |
gacgttttgtatctatctaaatataatacatatttcatcatgtaattatcatgcatgtaccaaaacatatgatagaacaaatcatatttaaggaaa---a |
8428485 |
T |
|
| Q |
224 |
aatataactagaacaacatgatgttatttggttggtaattatgtgagcatcaaacacatgatatgattgtatttatcattttaatctggctcaatatctt |
323 |
Q |
| |
|
| ||||| ||||||||||| |||||||||||||| | | |||||||||| ||||| ||||||||||||||||||| ||||| ||| ||||||||||||| |
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|
| T |
8428484 |
agtataa-tagaacaacataatgttatttggttgttg-tcatgtgagcattaaacatatgatatgattgtatttattatttttatccggctcaatatctt |
8428387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 8447859 - 8447945
Alignment:
| Q |
164 |
tgtaattatgaggcatgagccaaaa--aatataacagaactaataatgtttaacaaaacaaaaatataactagaacaacatgatgtt |
248 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||||||| || ||| |||||||||| |||||||| || ||||| |
|
|
| T |
8447859 |
tgtaattatgaggcatgagccaaaaaaaatataacataactaataatgttttaccaaaaaaaaatataattagaacaaaataatgtt |
8447945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 525 - 607
Target Start/End: Original strand, 8361634 - 8361716
Alignment:
| Q |
525 |
atgacaacaaaaacagtgattatttcagccttcatgaaaattaaatctaaataggttcagagcagatctattatgccataaat |
607 |
Q |
| |
|
||||||| |||| |||||||| ||| |||| | ||||||||| |||| ||||||||||||||||||| |||||||||| |||| |
|
|
| T |
8361634 |
atgacaataaaatcagtgattgttttagccataatgaaaattgaatcaaaataggttcagagcagatatattatgccaaaaat |
8361716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 8408705 - 8408774
Alignment:
| Q |
232 |
tagaacaacatgatgttatttggttggtaattatgtgagcatcaaacacatgatatgattgtatttatcat |
302 |
Q |
| |
|
|||||||| || || ||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
8408705 |
tagaacaaaataatattatttggttggttattacgtgagcatcaaaca-atgatatgattgtatttatcat |
8408774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 626 - 695
Target Start/End: Original strand, 8355264 - 8355333
Alignment:
| Q |
626 |
tgtccatggtttggcagatggagcttcattcatcgactccaatcgatgtccagctggagctggaaagaat |
695 |
Q |
| |
|
|||||||||| |||||||||||| | |||||| || |||||||||||||| | ||||||||||||||||| |
|
|
| T |
8355264 |
tgtccatggtgtggcagatggagatgcattcagcgtctccaatcgatgtctacctggagctggaaagaat |
8355333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 539 - 598
Target Start/End: Original strand, 8415057 - 8415116
Alignment:
| Q |
539 |
agtgattatttcagccttcatgaaaattaaatctaaataggttcagagcagatctattat |
598 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
8415057 |
agtgattgtttcagccatcatgaaaatcgaatctaaataggttcagagcagatatattat |
8415116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 8437239 - 8437304
Alignment:
| Q |
233 |
agaacaacatgatgttatttggttggtaattatgtgagcatcaaacacatgatatgattgtattta |
298 |
Q |
| |
|
||||||| || |||||||||||||||| || ||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
8437239 |
agaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttattta |
8437304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 626 - 702
Target Start/End: Complemental strand, 8483073 - 8482997
Alignment:
| Q |
626 |
tgtccatggtttggcagatggagcttcattcatcgactccaatcgatgtccagctggagctggaaagaattactcat |
702 |
Q |
| |
|
|||||||||| ||||||| ||| | |||||| ||||||||||||||||| | | ||||||||||||||| |||||| |
|
|
| T |
8483073 |
tgtccatggtgtggcagagagagatgcattcaccgactccaatcgatgtctacccggagctggaaagaataactcat |
8482997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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