View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4764_low_2 (Length: 521)
Name: NF4764_low_2
Description: NF4764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4764_low_2 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 19 - 521
Target Start/End: Complemental strand, 3209477 - 3208976
Alignment:
| Q |
19 |
catcaactacaccattaatcttatcccaacttacaactctctcccttcaacctcaacttcctcgccatcatcgctgactagttcttgctcttcttcttcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
3209477 |
catcaactacaccattaatcttatcccaacttacaactctctcccttcaacctcaacttcctcgccgtcatcgctgcctagttcttgctcttcttcttcc |
3209378 |
T |
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| Q |
119 |
gtgaccgccccctcgtcctcttccgtttcaccatcgacgactgattcctcctcctcctactcaccgctctcaccgtcgtagctcttgtcttcaccggcgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3209377 |
atgaccgccccctcgtcctcttccgtttcaccatcgacgaccgcttactcctcctcctactcaccactctcaccgtcgtagctcttgtcttcaccggcgt |
3209278 |
T |
|
| Q |
219 |
ttggcttaacgtcctcgtgagtcgtgtcggtgctgcggtggttgttttgaatgaggcgtttcagagtattgatgatttgtatttagatgaagaagagatc |
318 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209277 |
ttggcttaacgtcctcgtgagtcgtgttggtgctgcggtggttgttttgaatgaggcgtttcagagtattgatgatttgtatttagatgaagaagagatc |
3209178 |
T |
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| Q |
319 |
tttgatggtgatttgctttcagttgttggtggtagctttgataccaaacgttgtttcagcgacggtgaaggagagtcacaatctgggtcagcgcttgttg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3209177 |
tttgatggtgatttgctttcagttgttggtggtagcttcgataccaaacgttg-ttcagcgacggtgaaggagagtcacaatctgggtcagcgcttattg |
3209079 |
T |
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| Q |
419 |
tttcaaaaccgggtcttggtgcgaggatatgaggttctatgtgagaggatgagaagtcacgatctgggtcagcgcttgttcttcttgaggttgttgttga |
518 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209078 |
tttcaaaactgtgtcttggtgcgaggatatgaggttctatgtgagaggatgagaagtcacgatctgggtcagcgcttgttcttcttgaggttgttgttga |
3208979 |
T |
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| Q |
519 |
gga |
521 |
Q |
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||| |
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| T |
3208978 |
gga |
3208976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 514
Target Start/End: Complemental strand, 109312 - 108809
Alignment:
| Q |
19 |
catcaactacaccattaatcttatcccaacttacaactctctcccttcaacctcaacttcctcgccatcatcgctgactagttcttgctcttcttcttcc |
118 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
109312 |
catcaactacatcattaattttatcccaacttacaactctctcccttcaacctcaacttcctcgccgtcatcgctgcctagttcttgctcttcttcttcc |
109213 |
T |
|
| Q |
119 |
gtgaccgccccctcgtcctcttccgtttcaccatcgacgactgattcctcctcctcctactcaccgctctcaccgtcgtagctcttgtcttcaccggcgt |
218 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
109212 |
atgaccgccct-tcgtcctcttccgtttcaccatcgacgacctcttcctcctcctcctactcaccgctctcaccgtcgtagctcttgtcttcaccggcgt |
109114 |
T |
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| Q |
219 |
ttggcttaacgtcctcgtgagtcgtgtcggtgct----------gcggtggttgttttgaatgaggcgtttcagagtattgatgatttgtatttagatga |
308 |
Q |
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| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
109113 |
t-ggcttaacgtcctcgtgagtcgtgtcggtgctcgtcggtgttgcggtggttgttttgaatgaggcgtttcagagtattgatgatttgtatttagatga |
109015 |
T |
|
| Q |
309 |
agaagagatctttgatggtgatttgctttcagttgttggtggtagctttgataccaaacgttgtttcagcgacggtgaaggagagtcacaatctgggtca |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
109014 |
agaagagatctttgatggtgatttgctttcagttgttggtggtagcttcgataccaaacgttgtttcagcgatggtgaaggagagtcacaatctgggtca |
108915 |
T |
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| Q |
409 |
gcgcttgttgtttcaaaaccgggtcttggtgcgaggatatgaggttctatgtgagaggatgagaagtcacgatctgggtcagcgcttgttcttcttgagg |
508 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
108914 |
gcgtttgttgtttcaaaaccgtgtcttggtgcgaggatatgaggttctatgtgagaggatgagaagtcacgatctgggtcagcgcttgttcttcttgaag |
108815 |
T |
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| Q |
509 |
ttgttg |
514 |
Q |
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|||||| |
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| T |
108814 |
ttgttg |
108809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 99 - 356
Target Start/End: Original strand, 31283114 - 31283374
Alignment:
| Q |
99 |
gttcttgctcttcttcttccgtgaccgccccctcgtcctcttccgtttcaccatcgacgactgattcctcctcctcctactcaccgctctcaccgtcgta |
198 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||| || ||| | ||||||||| |||||||| || | |||||| |||| |
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| T |
31283114 |
gttcttgcttttcttcttccgtgaccgccccgtcgtcctcttccgtttcaccattgatgaccgcttcctcctcgtcctactctccaccctcaccatcgtc |
31283213 |
T |
|
| Q |
199 |
gctcttgtcttcaccggcgtttggcttaacgtcctcgtg--agtcgt-gtcggtgctgcggtggttgttttgaatgaggcgtttcagagtattgatgatt |
295 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||| | |||||| ||||||||||||||||| ||| |||||||| |||||||||||||| |
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| T |
31283214 |
gctcttgtcttcaccggcgtttggcttaacgtccttgtgtcagtgctcgtcggttctgcggtggttgttttgcatgcggcgtttcggagtattgatgatt |
31283313 |
T |
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| Q |
296 |
tgtatttagatgaagaagagatctttgatggtgatttgctttcagttgttggtggtagctt |
356 |
Q |
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| T |
31283314 |
tgtatttagatgaagaagagatctttgatggtgatttgctttcagttgttggtggtagctt |
31283374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 31282834 - 31282882
Alignment:
| Q |
30 |
ccattaatcttatcccaacttacaactctctcccttcaacctcaacttc |
78 |
Q |
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| T |
31282834 |
ccattaatcctactccaacttacaactctctcccttcaacctcaacttc |
31282882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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