View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4764_low_3 (Length: 420)
Name: NF4764_low_3
Description: NF4764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4764_low_3 |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 865 - 447
Alignment:
| Q |
1 |
ctgttaagcagaaaatagaaaatat-gcttaaaacgcagtttggatatagattcttgaacacataaaagcactaaaacttgaatttagataatactaggg |
99 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||||| || | | | | | ||||||||| ||||||| |||||||||||||||| | |
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| T |
865 |
ctgttaagcaaaaaatagaaaataaagcttaaaacgcagtttggatataggttttgggaaaaaaaaaagcacttaaacttgcatttagataatactagag |
766 |
T |
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| Q |
100 |
ttttactgtcacgacaaagaaaac--aatagtaactcttcaccnnnnnnngtcaactattgtttg---ggtgatcatattttagatcatcttccaagtat |
194 |
Q |
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||||||||||| |||||| |||| |||||||||||||||| | | || |||| ||||||||||||||||||||||||||||| || |
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| T |
765 |
ttttactgtcaagacaaaaaaaaacaaatagtaactcttcactttttttttttt--ttttttttgtatggtgatcatattttagatcatcttccaagcat |
668 |
T |
|
| Q |
195 |
attgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagtagtagtttttggtggagatttcagacagatttt |
294 |
Q |
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| T |
667 |
attgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagcagtggtttttgatggagatttcagacagatttt |
568 |
T |
|
| Q |
295 |
gcttgtaattcccaaaggtattagacaagaagttgtcattctattattaattcatcctatctttgagttatgatttgccgatatcacgaaacatgaatgg |
394 |
Q |
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| T |
567 |
gccgataattcccaaaggtattagacaagaagttgtcattctactattaattcatcctatctttgagttatgatttgccgttatcacgaaacatgaatgg |
468 |
T |
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| Q |
395 |
tgatgcaattgatgatgtcca |
415 |
Q |
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| T |
467 |
tgatgcaattgatgatgtcca |
447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 4649848 - 4649430
Alignment:
| Q |
1 |
ctgttaagcagaaaatagaaaatat-gcttaaaacgcagtttggatatagattcttgaacacataaaagcactaaaacttgaatttagataatactaggg |
99 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||||| || | | | | | ||||||||| ||||||| |||||||||||||||| | |
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| T |
4649848 |
ctgttaagcaaaaaatagaaaataaagcttaaaacgcagtttggatataggttttgggaaaaaaaaaagcacttaaacttgcatttagataatactagag |
4649749 |
T |
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| Q |
100 |
ttttactgtcacgacaaagaaaac--aatagtaactcttcaccnnnnnnngtcaactattgtttg---ggtgatcatattttagatcatcttccaagtat |
194 |
Q |
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| T |
4649748 |
ttttactgtcaagacaaaaaaaaacaaatagtaactcttcactttttttttttt--ttttttttgtatggtgatcatattttagatcatcttccaagcat |
4649651 |
T |
|
| Q |
195 |
attgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagtagtagtttttggtggagatttcagacagatttt |
294 |
Q |
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| T |
4649650 |
attgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagcagtggtttttgatggagatttcagacagatttt |
4649551 |
T |
|
| Q |
295 |
gcttgtaattcccaaaggtattagacaagaagttgtcattctattattaattcatcctatctttgagttatgatttgccgatatcacgaaacatgaatgg |
394 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4649550 |
gccgataattcccaaaggtattagacaagaagttgtcattctactattaattcatcctatctttgagttatgatttgccgttatcacgaaacatgaatgg |
4649451 |
T |
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| Q |
395 |
tgatgcaattgatgatgtcca |
415 |
Q |
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||||||||||||||||||||| |
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| T |
4649450 |
tgatgcaattgatgatgtcca |
4649430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 47400155 - 47400095
Alignment:
| Q |
231 |
gaaataaagacattttgtttggtggtaaagtagtagtttttggtggagatttcagacagat |
291 |
Q |
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| T |
47400155 |
gaaataaaaacattccatttggtggtaaagttgtggtttttggtggtgacttcagacagat |
47400095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 9825372 - 9825404
Alignment:
| Q |
264 |
tagtttttggtggagatttcagacagattttgc |
296 |
Q |
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| T |
9825372 |
tagtttttggtggagattttagacagattttgc |
9825404 |
T |
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