View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4764_low_9 (Length: 227)

Name: NF4764_low_9
Description: NF4764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4764_low_9
NF4764_low_9
[»] scaffold0163 (2 HSPs)
scaffold0163 (74-223)||(20442-20593)
scaffold0163 (1-69)||(20279-20347)
[»] chr3 (4 HSPs)
chr3 (74-223)||(2159792-2159943)
chr3 (74-223)||(40088954-40089105)
chr3 (1-69)||(40089200-40089268)
chr3 (3-69)||(2159631-2159697)
[»] chr1 (2 HSPs)
chr1 (74-187)||(20175887-20176002)
chr1 (1-69)||(20175724-20175792)
[»] scaffold0141 (1 HSPs)
scaffold0141 (3-73)||(30680-30750)
[»] scaffold0049 (1 HSPs)
scaffold0049 (3-73)||(84062-84132)
[»] chr2 (2 HSPs)
chr2 (15-69)||(22906954-22907008)
chr2 (6-66)||(45019150-45019210)
[»] scaffold0003 (1 HSPs)
scaffold0003 (16-69)||(153382-153435)
[»] chr5 (1 HSPs)
chr5 (1-69)||(27416926-27416994)
[»] chr8 (1 HSPs)
chr8 (6-69)||(14887167-14887230)
[»] chr7 (3 HSPs)
chr7 (6-69)||(5387393-5387456)
chr7 (6-69)||(9540718-9540781)
chr7 (6-69)||(18663685-18663748)
[»] scaffold0611 (1 HSPs)
scaffold0611 (6-66)||(2746-2806)


Alignment Details
Target: scaffold0163 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 74 - 223
Target Start/End: Original strand, 20442 - 20593
Alignment:
Q  74 aaaagccttatatggtctcaaacaagctcattgatcttggtat--aagacttagcacatgtttaatcaaaaatgatttttctcgtggacctattgacaca 171  Q
    ||||||||||||||||||||||||||||| | || ||||||||  |||||| || || | |||| |||||||||||||| ||||||||| ||| || |||    
T  20442 aaaagccttatatggtctcaaacaagctcctcgagcttggtatgaaagactaagtacctttttactcaaaaatgattttactcgtggacatatcgataca 20541  T
Q  172 actctttttagaaaaattcataatcaagatctcttaattgttcaagtctatg 223  Q
    |||||||| ||||||| || ||| ||||| || |||||||||||||||||||    
T  20542 actcttttcagaaaaagtcttaaccaagaccttttaattgttcaagtctatg 20593  T

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Target: scaffold0163; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20279 - 20347
Alignment:
Q  1 caattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 69  Q
    |||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||    
T  20279 caattagaattttacttgcatatgctgcacataaacaaatcaaactttttcaaatggatgttaaaagtg 20347  T

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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 74 - 223
Target Start/End: Original strand, 2159792 - 2159943
Alignment:
Q  74 aaaagccttatatggtctcaaacaagctcattgatcttggtat--aagacttagcacatgtttaatcaaaaatgatttttctcgtggacctattgacaca 171  Q
    ||||||||||||||||||||||||||||| | || ||||||||  |||||| || || | |||| |||||||||||||||||||||||| ||| || |||    
T  2159792 aaaagccttatatggtctcaaacaagctcctcgagcttggtatgaaagactaagtacttttttactcaaaaatgatttttctcgtggacatatcgataca 2159891  T
Q  172 actctttttagaaaaattcataatcaagatctcttaattgttcaagtctatg 223  Q
    ||||| || ||||||| || ||| ||||| || |||||||||||||||||||    
T  2159892 actctcttcagaaaaagtcttaaccaagaccttttaattgttcaagtctatg 2159943  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 40089105 - 40088954
Alignment:
Q  74 aaaagccttatatggtctcaaacaagctcattgatcttggtat--aagacttagcacatgtttaatcaaaaatgatttttctcgtggacctattgacaca 171  Q
    ||||||||||||||||||||||||||||| | || ||||||||  |||||| || || | |||| |||||||||||||||||||||||| ||| || |||    
T  40089105 aaaagccttatatggtctcaaacaagctcctcgagcttggtatgaaagactaagtacttttttactcaaaaatgatttttctcgtggacatatcgataca 40089006  T
Q  172 actctttttagaaaaattcataatcaagatctcttaattgttcaagtctatg 223  Q
    ||||| || ||||||| || ||| ||||| || |||||||||||||||||||    
T  40089005 actctcttcagaaaaagtcttaaccaagaccttttaattgttcaagtctatg 40088954  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 40089268 - 40089200
Alignment:
Q  1 caattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 69  Q
    ||||||||||||||||||| |||| |||||| ||||| |||||||||||||||||||||||||||||||    
T  40089268 caattagaattttacttgcttatgctgcacataaacaaatcaaactttttcaaatggatgttaaaagtg 40089200  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 2159631 - 2159697
Alignment:
Q  3 attagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 69  Q
    ||||||||||| |||||||||| |||||| ||||| |||||||||||||||||||| ||||||||||    
T  2159631 attagaattttgcttgcatatgctgcacataaacaaatcaaactttttcaaatggacgttaaaagtg 2159697  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 74 - 187
Target Start/End: Original strand, 20175887 - 20176002
Alignment:
Q  74 aaaagccttatatggtctcaaacaagctcattgatcttggtat--aagacttagcacatgtttaatcaaaaatgatttttctcgtggacctattgacaca 171  Q
    ||||||||||||||||||||||||||||| | || ||||||||  |||||| || || | |||| |||||||||||||||||||||||| ||| || |||    
T  20175887 aaaagccttatatggtctcaaacaagctcctcgagcttggtatgaaagactaagtacttttttactcaaaaatgatttttctcgtggacatatcgataca 20175986  T
Q  172 actctttttagaaaaa 187  Q
    ||||| || |||||||    
T  20175987 actctcttcagaaaaa 20176002  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20175724 - 20175792
Alignment:
Q  1 caattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 69  Q
    ||||||||||||| |||||||||| |||||| ||||| |||||||||||||||||||| ||||||||||    
T  20175724 caattagaattttgcttgcatatgctgcacataaacaaatcaaactttttcaaatggacgttaaaagtg 20175792  T

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Target: scaffold0141 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 30680 - 30750
Alignment:
Q  3 attagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtgtttt 73  Q
    ||||||||| | |||||||||| |||||| |||  ||| |||||||||||||||||||| |||||||||||    
T  30680 attagaattcttcttgcatatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtgtttt 30750  T

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Target: scaffold0049 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 84132 - 84062
Alignment:
Q  3 attagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtgtttt 73  Q
    ||||||||| | |||||||||| |||||| |||  ||| |||||||||||||||||||| |||||||||||    
T  84132 attagaattcttcttgcatatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtgtttt 84062  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 22906954 - 22907008
Alignment:
Q  15 cttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 69  Q
    ||||||||||||||||| |||  ||| |||||||||||||||||||| |||||||    
T  22906954 cttgcatatgttgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 22907008  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 45019150 - 45019210
Alignment:
Q  6 agaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaa 66  Q
    |||||| | |||||||||| |||||| |||  ||| |||||||||||||||||||| ||||    
T  45019150 agaattattcttgcatatgctgcacataaaagcattaaactttttcaaatggatgtgaaaa 45019210  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 153382 - 153435
Alignment:
Q  16 ttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 69  Q
    |||||||||||||||| |||  ||| |||||||||||||||||||| |||||||    
T  153382 ttgcatatgttgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 153435  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 27416926 - 27416994
Alignment:
Q  1 caattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 69  Q
    ||||||||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  27416926 caattagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 27416994  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 14887230 - 14887167
Alignment:
Q  6 agaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 69  Q
    |||||| | |||||||||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  14887230 agaattcttcttgcatatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 14887167  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 5387456 - 5387393
Alignment:
Q  6 agaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 69  Q
    |||||| | ||||| ||||||||||| |||  ||| |||||||||||||||||||| |||||||    
T  5387456 agaattcttcttgcttatgttgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 5387393  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 9540781 - 9540718
Alignment:
Q  6 agaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 69  Q
    |||||| | |||||||||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  9540781 agaattcttcttgcatatgatgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 9540718  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 18663685 - 18663748
Alignment:
Q  6 agaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 69  Q
    |||||| | ||||||||| ||||||| |||  ||| |||||||||||||||||||| |||||||    
T  18663685 agaattcttcttgcatatattgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 18663748  T

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Target: scaffold0611 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 2746 - 2806
Alignment:
Q  6 agaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaa 66  Q
    |||||| | |||||||||| |||||| |||  ||| |||||||||||||||||||| ||||    
T  2746 agaattcttcttgcatatgatgcacataaaagcattaaactttttcaaatggatgtgaaaa 2806  T

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