View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4765-Insertion-2 (Length: 858)
Name: NF4765-Insertion-2
Description: NF4765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4765-Insertion-2 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0127 (1 HSPs) |
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| [»] scaffold0087 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 716; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 102 - 858
Target Start/End: Original strand, 4388956 - 4389715
Alignment:
| Q |
102 |
ggtttctatagtctacaatcattgtaatacagttactataaaccttcataagctctatattagttgtaatgctacactttcatcaattaatgagaattta |
201 |
Q |
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| T |
4388956 |
ggtttctatagtctacaatcattgtaatacagttactataaaccttcataagctctatattagttgtaatgctacactttcatcaattaatgagaattta |
4389055 |
T |
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| Q |
202 |
cttgattcatttcttctctcataatacacattatgagcatgcaatgcaaagccttactatatctcttgatagtagatgtataaaagtaagaaaatggtca |
301 |
Q |
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| T |
4389056 |
cttgattcatttcttctctcataatacacattatgagcatgcaatgcaaagccttactatatctcttgatagtagatgtataaaagtaagaaaatggtca |
4389155 |
T |
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| Q |
302 |
atgaaggaagagtgtgtagcaagatgcgtttggctagaaatattttgaataccaacccatgcttagggtctgaaaaatatggaacttgttattgataaga |
401 |
Q |
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| T |
4389156 |
atgaaggaagagtgtgtagcaagatgcgtttggctagaaatattttgaataccaacccatgcttagggtctgaaaaatatggaacttgttattgataaga |
4389255 |
T |
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| Q |
402 |
taggaaagattgatcatgtagaggtggagaaagggttatctatggagtcggctagagttttggttcacacaaaacttatgccattcattgaagatcgatt |
501 |
Q |
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| T |
4389256 |
taggaaagattgatcatgtagaggtggagaaagggttatctatggagtcagctagagttttggttcacacaaaactcatgccattcattgaagatcgatt |
4389355 |
T |
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| Q |
502 |
ctttatggtgtgatg-catttgctgtctcgagaaagtgataaggatagcctatgaagtatgttgaaagttgaaaatgcttctgcaaaaactgttgaaccc |
600 |
Q |
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| T |
4389356 |
ctttatggtgtgatgccatttgctgtctcgagaaagtgataaggatagcctatgaagtatgttgaaagttgaaaatgcttctgcaaaaactgttgaaccc |
4389455 |
T |
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| Q |
601 |
tccaagtgttatgaactagggcatgaattgggagttattaaaacaagggaaagacacgttaagcctcctggttttagctttattggcccaacatatctga |
700 |
Q |
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| T |
4389456 |
tccaagtgttatgaactagggcatgaattgggagttattaaaacaagggaaagacacgttaagccttctggttttagctttattggcccaacatatctga |
4389555 |
T |
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| Q |
701 |
attcccaataaaaggaaaatatattcttgggttagacttgtctacttgatgcagtccactgtaaaacatttcagagtagtattggcaataaatttgcaaa |
800 |
Q |
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| T |
4389556 |
attcccaataaagggaaaatatattcttgggttagacttgtctacttgatgcagtccactgtaaaacattttagagtagtattggcaataaatttgcaaa |
4389655 |
T |
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| Q |
801 |
cgggaaatag-aaaaaggcgccggctaaaaat-aaagtaaggttcatagggatttacaaa |
858 |
Q |
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| T |
4389656 |
cgggaaatagaaaaaaggcgccggctaaaaataaaagtaaggttcatagggatttacaaa |
4389715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 4388838 - 4388936
Alignment:
| Q |
8 |
tatgtttatagcaagcttcaagaatcaagaaaattattgcatcatgaagagaaagagaagaatgaagattagttacacagataacttgttggacggttt |
106 |
Q |
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| T |
4388838 |
tatgtttatagcaagcttcaagaatcaagaaaattattgcatcatgaagagaaagagaagaatgaagattagttacacagataacttgttggacagttt |
4388936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 14027 - 13933
Alignment:
| Q |
120 |
tcattgtaatacagttactataaaccttcataagctctatattagttgtaatgctacactttcatcaattaatgagaatttacttgattcatttc |
214 |
Q |
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| T |
14027 |
tcattgtaatatagctatcatacaccttcataacctctatataagttgtaacgctacactttgatcaacgaatgagaatttacttcgttcatttc |
13933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 2837 - 2896
Alignment:
| Q |
143 |
accttcataagctctatattagttgtaatgctacactttcatcaattaatgagaatttac |
202 |
Q |
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| T |
2837 |
accttcataacctctatataagttgtaacgctacactttgatcaacgaatgagaatttac |
2896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 7586 - 7645
Alignment:
| Q |
143 |
accttcataagctctatattagttgtaatgctacactttcatcaattaatgagaatttac |
202 |
Q |
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|||||||||| |||||||| |||||||| |||||||||| ||||| ||||||||||||| |
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| T |
7586 |
accttcataacctctatataagttgtaacgctacactttgatcaacgaatgagaatttac |
7645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 17726 - 17785
Alignment:
| Q |
143 |
accttcataagctctatattagttgtaatgctacactttcatcaattaatgagaatttac |
202 |
Q |
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|||||||||| |||||||| |||||||| |||||||||| ||||| ||||||||||||| |
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| T |
17726 |
accttcataacctctatataagttgtaacgctacactttgatcaacgaatgagaatttac |
17785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 5842684 - 5842743
Alignment:
| Q |
143 |
accttcataagctctatattagttgtaatgctacactttcatcaattaatgagaatttac |
202 |
Q |
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| T |
5842684 |
accttcataacctctatataagttgtaacgctacactttgatcaacgaatgagaatttac |
5842743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 9606683 - 9606639
Alignment:
| Q |
183 |
atcaattaatgagaatttacttgattcatttcttctctcataata |
227 |
Q |
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|||||||||||| ||||||||| ||||||||||||| |||||||| |
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| T |
9606683 |
atcaattaatgataatttacttcattcatttcttctttcataata |
9606639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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