View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4765-Insertion-3 (Length: 724)
Name: NF4765-Insertion-3
Description: NF4765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4765-Insertion-3 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 693; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 8 - 724
Target Start/End: Original strand, 2107449 - 2108165
Alignment:
| Q |
8 |
acttgcagccaaagtttctttaaaaccaaaaagcctctttgctttttgtttggttttctgcttcaatagataaatttccatttagataattcttttgaac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2107449 |
acttgcagccaaagtttctttaaaaccaaaaagcctctttgctttttgtttggttttctgcttcaatagataaatttccatttagataattcttttgaac |
2107548 |
T |
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| Q |
108 |
aatctattaacttgtcttacatatgtatttaatcgatcttaaaacttttttgtagacggtcaagttcaagaagattgcatgaattaacgatcatccgacg |
207 |
Q |
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| T |
2107549 |
aatctattaacttgtcttacatatgtatttaatcgatcttaaaacttttttgtagacggtcaagttcaagaagattgcatgaattaacgatcatccgacg |
2107648 |
T |
|
| Q |
208 |
gcatgccactgtcaaaaactattggcaactatgttacatttatgtctagcaagtacttcagtttagcaaattggtggtttcacatgtgaactggcatgtc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2107649 |
gcatgccactgtcaaaaactattggcaactatgttacatttatgtctagcaagtacttcagtttagcaaattggtggtttcacatgtgaactggcatgtc |
2107748 |
T |
|
| Q |
308 |
aaaggtcaaatattgtttgtaatattgtaaatttgaacatgcctaatgtgtagatgcccactattagcagtttagggacttaaaaaatgttgtcatgcat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2107749 |
aaaggtcaaatattgtttgtaatattgtaaatttgaacatgcctaatgtgtagatgcccactattagcagtttagggacttaaaaaatgttgtcatgcat |
2107848 |
T |
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| Q |
408 |
gttgtttggatcttatatatgcacatttctaaatttctattttctatgttcatctgaaaaacactttgctgtgtgataatcactatgaatgaaggtgata |
507 |
Q |
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| T |
2107849 |
gttgtttggatcttatatatgcacatttctaaatttctattttctatgttcatctgaaaaacactttgatgtgtgataatcactatgaatgaaggtgata |
2107948 |
T |
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| Q |
508 |
gatgttatttatgaccccaaaaagaagcttcattttgatacattatattcttcaatcttcctaggatttttactaaaaatttaagggatttgtagaacat |
607 |
Q |
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| T |
2107949 |
gatgttatttatgaccccaaaaagaagcttcattttgatacattatattcttcaatcttcctagtatttttactaaaaatgtaagggatttgtagaacat |
2108048 |
T |
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| Q |
608 |
aaaatgcaatttgtctaaagaagtattaggaaacttgattttgaaaactttcaactgtagagtgtttgtcggatggctttgtagttttgttcttcttctg |
707 |
Q |
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| T |
2108049 |
acaatgcaatttgtctaaagaagtattaggaaacttgattttgaaaactttcaactgtagagtgtttgtcagatggctttgtatttttgttcttcttctg |
2108148 |
T |
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| Q |
708 |
ttcattcatatattatt |
724 |
Q |
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| T |
2108149 |
ttcattcatatattatt |
2108165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 655
Target Start/End: Original strand, 2099270 - 2099913
Alignment:
| Q |
8 |
acttgcagccaaagtttctttaaaaccaaaaagcctctttgctttttgtttggttttctgcttcaatagataaat-ttccatttagataattcttt---- |
102 |
Q |
| |
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||||||| |||||||| ||||||||||||||| | |||||||||| ||||| ||||||||| ||| |||| ||| || ||||||||||||| ||| |
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| T |
2099270 |
acttgcatccaaagttgctttaaaaccaaaaatcatctttgctttgtgtttagttttctgcatcagtagaaaaaaatttcatttagataattttttggga |
2099369 |
T |
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| Q |
103 |
---------tgaacaatctattaacttgtcttacatatgtatttaatcgatcttaaaacttttttgtagacggtcaagttcaagaagattgcatgaatta |
193 |
Q |
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| T |
2099370 |
gaaatattttgaacaatctattaacttgtcttaaatctgtatttaattgatcttaaac--tttatgtagatggtcaagttcaagaagatcgcatgaatta |
2099467 |
T |
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| Q |
194 |
acgatcatccgacggcatgccactgtcaaaaactattggcaactatgttacatttatgtctagcaa-------gtacttcagtttagcaaattggtggtt |
286 |
Q |
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| T |
2099468 |
acgatcatctgacagcatgccactgtcaaaaactattggcaactatgttacatttctgtctagcaactagtaagtactacagtttagcaaattggtggtt |
2099567 |
T |
|
| Q |
287 |
tcacatgtgaactggcatgtcaaaggtcaaatattgtttgtaatattgtaaatttgaacatgcctaatgtgtagatgcccactattagcagtttagggac |
386 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
2099568 |
tcacatgtgaactggcatgtcaaaggtcaaatgttgtttgtaatattgtaaatttgaacatgcccaatgtgtagatgcccaccattagcagtttagggac |
2099667 |
T |
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| Q |
387 |
ttaaaaaatgttgtcatgcatgttgtttggatcttatatatgcacatttctaaatttctattttctatgttcatctgaaaaacactttgctgtgtgataa |
486 |
Q |
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| T |
2099668 |
ttaaaa-----tttctgtcatgttgtttggatct--tatgtgcccatttc--aatttctattttctatgttcatctgaaaaattctttgctgtgtgataa |
2099758 |
T |
|
| Q |
487 |
tcactatgaatgaaggtgatagatgttatttatgaccccaaaaagaagcttcattttgatacattatattcttcaatcttcctaggatttttactaaaaa |
586 |
Q |
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| T |
2099759 |
tcactatgaat---ggtgatagatg----ttatgaccccaaaaagaagcttcattttgatacattatat-------tcttcctaatatttttactaaaat |
2099844 |
T |
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| Q |
587 |
tttaagggatttgtagaacataaaatgcaatttgtctaaagaagtattaggaaacttgattttgaaaac |
655 |
Q |
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| T |
2099845 |
tttagggaattagtagaacatagaatacaatttgtctaaagaagtattaggaaacttgattttgaaaac |
2099913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 128 - 351
Target Start/End: Original strand, 2089119 - 2089338
Alignment:
| Q |
128 |
atatgtatttaatcgatcttaaaacttttttgtagacggtcaagttcaagaagattgcatgaattaacgatcatccgacggcatgccactgtcaaaaact |
227 |
Q |
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||||||| ||||| ||||||||| |||||||||| ||||||||| |||||||| ||||||||||| | |||| ||| |||||||||||||||||||| |
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| T |
2089119 |
atatgtagttaatggatcttaaac--tttttgtagatggtcaagttgaagaagatcgcatgaattaatgttcatatgacagcatgccactgtcaaaaact |
2089216 |
T |
|
| Q |
228 |
attggcaactatgttacatttatgtctagcaagtacttcagtttagcaaattggtggtttcacatgtgaactggcatgtcaaaggtcaaatattgtttgt |
327 |
Q |
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| T |
2089217 |
attggcaactatgttatctttctgtctaacaagta--acaatttagcacattagtggttttatatgtgaccatgcatgtcaaaggtcaaatattgtttgt |
2089314 |
T |
|
| Q |
328 |
aatattgtaaatttgaacatgcct |
351 |
Q |
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| T |
2089315 |
aatattgtaaatttgaacatgcct |
2089338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 632 - 675
Target Start/End: Original strand, 2089513 - 2089556
Alignment:
| Q |
632 |
attaggaaacttgattttgaaaactttcaactgtagagtgtttg |
675 |
Q |
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| T |
2089513 |
attaggaaacttgattttgaaaactttctactgtggagtgtttg |
2089556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 2055168 - 2055237
Alignment:
| Q |
25 |
ctttaaaaccaaaaagcctctttgctttttgtttggttttctgcttcaatagataaatttccatttagat |
94 |
Q |
| |
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| T |
2055168 |
ctttgaaaccgaaaagcatctttgctttgtgtttggttttctatttcaattgatatattttcatttagat |
2055237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 500
Target Start/End: Original strand, 2089374 - 2089427
Alignment:
| Q |
447 |
ttttctatgttcatctgaaaaacactttgctgtgtgataatcactatgaatgaa |
500 |
Q |
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||||||||||||||||||||||| ||||||| |||||| ||||| |||| |||| |
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| T |
2089374 |
ttttctatgttcatctgaaaaactctttgctatgtgatgatcaccatgactgaa |
2089427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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