View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4765_high_1 (Length: 509)
Name: NF4765_high_1
Description: NF4765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4765_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 1861406 - 1861153
Alignment:
| Q |
18 |
gttatgtatcacgttatannnnnnnnagataatattgctcaatgatgatcgtagtagcaagaaggggttatgtatctttttgtattatgttactattgtt |
117 |
Q |
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| T |
1861406 |
gttatgtatcacgttatattttttttagataatattgctcaatgatgattgtagtagcaagaaggggttatgtatctttttgtattatgtcactattgtt |
1861307 |
T |
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| Q |
118 |
tttgtagttatatattatgtggtttcgataagacatttgtggtacaaaattttaaacccatac----gtcaaattagtgaaaccttttgagcatagttta |
213 |
Q |
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| T |
1861306 |
tttgtagttatatattatgtggtttcgataagacatttgtggtacaaaattttaaacccatacgaaggtcaaattagtgaaaccttttgagcatagttta |
1861207 |
T |
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| Q |
214 |
atcgattgaaaaataaattaataaaatcagttcaatttcgattcatttagacta |
267 |
Q |
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| T |
1861206 |
atccattagaaaataaattaataaaatcagttcaattccgattcatttagacta |
1861153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 290 - 433
Target Start/End: Complemental strand, 1861024 - 1860875
Alignment:
| Q |
290 |
caatcaataacttgatcaattttttccttaaaaagaataacttgatcaatttttgattcaatttattgaattaatcttcagtcgtctgattttcaaaata |
389 |
Q |
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| T |
1861024 |
caatcaataacttgatcaattttttccttaaaaaaaataacttgatcaatttttggttcaatttattgaattaatcttcgatcatctgattttcaaaaga |
1860925 |
T |
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| Q |
390 |
tttgtggt-gatgaacaaca-----tagtagtcaactacactgtaaaaaa |
433 |
Q |
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| T |
1860924 |
tttgtggtggctgaataacaacaagtagtagtgaactacactgtaaaaaa |
1860875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 447 - 492
Target Start/End: Complemental strand, 1860806 - 1860761
Alignment:
| Q |
447 |
acctaaaatcgtttttaagcattaattgattttgggtgtctatcat |
492 |
Q |
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| T |
1860806 |
acctaaaatcgtttttaagcattaattgattttgggtgtctatcat |
1860761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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