View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4765_high_8 (Length: 237)
Name: NF4765_high_8
Description: NF4765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4765_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 2107453 - 2107237
Alignment:
| Q |
18 |
caagtcagtgcagagttctgatatattaggaaatcaaataatcaaactaaaagattcatttttggtttcaaaggatgcttaaatggtttcaaagcagctt |
117 |
Q |
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| T |
2107453 |
caagtcagtgcagagttctgatatattaggaaatcaaataatcaaactaaaagattcatttttggtttcaaaggatgcttaaatggtttcaaagcagctt |
2107354 |
T |
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| Q |
118 |
cggatgcaagtcattgcagttcttgttcattaggaaatcaaacaattgaacatttgaaacctatagggactaagaaaagtcttaaggtctaacctccaag |
217 |
Q |
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| T |
2107353 |
tggatgcaagtcattgcagttcttgttcattaggaaatcaaacaattgaacatttgtaacctatagggactaagaaaagtcttaaggtctaacctccaag |
2107254 |
T |
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| Q |
218 |
aaagatggcccgatttg |
234 |
Q |
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| T |
2107253 |
aaagatggcccgatttg |
2107237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 104 - 234
Target Start/End: Complemental strand, 2099210 - 2099079
Alignment:
| Q |
104 |
tttcaaagcagcttcggatgcaagtcattgcagttcttgttcattaggaaatcaaacaattgaacatttgaaacctataggga-ctaagaaaagtcttaa |
202 |
Q |
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| T |
2099210 |
tttcaaagcagctttggctccaagtcattgcaattcttgtttattaagaaatcaaagaatcaaacaattgaaacttgtagggatctaagaaatttcttaa |
2099111 |
T |
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| Q |
203 |
ggtctaacctccaagaaagatggcccgatttg |
234 |
Q |
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| T |
2099110 |
ggtctaacctccgagaaagatggcccgatttg |
2099079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 2099274 - 2099223
Alignment:
| Q |
18 |
caagtcagtgcagagttctgatatattaggaaatcaaataatcaaactaaaa |
69 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
2099274 |
caagtcagtgcagagttctgatatactaggaaattaaataatcaaactaaaa |
2099223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 2059302 - 2059250
Alignment:
| Q |
166 |
aacatttgaaacctatagggactaagaaaagtcttaaggtctaacctccaaga |
218 |
Q |
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|||||||||||| ||||| | |||||||||||||||||||||||||| |||| |
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| T |
2059302 |
aacatttgaaacatatagaaattaagaaaagtcttaaggtctaacctcgaaga |
2059250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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