View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4765_low_2 (Length: 496)
Name: NF4765_low_2
Description: NF4765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4765_low_2 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 14 - 477
Target Start/End: Original strand, 11780310 - 11780775
Alignment:
| Q |
14 |
tcatcatgcaaccggg-aaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaa |
112 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| |
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| T |
11780310 |
tcatcatgcaatcggggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaacgctgtcaaacacgttatgtagtggaaagctgaaa |
11780409 |
T |
|
| Q |
113 |
gatgttgacgacaatgatgtcctaggcatagggaccgtcatatgagaagtaacaactgatgatgtagaattaacaaccggccccatgtgtgagctagcaa |
212 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| |
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| T |
11780410 |
gatgttgacgacaatgatgtcctgggcatagggaccgtcatatgagaagtaacaactgctgaagtagaattaacaaccgaccccatgtgtgagctagcaa |
11780509 |
T |
|
| Q |
213 |
taatagggtccggaatagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||| |
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| T |
11780510 |
taatagggtccggaatagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggaactctctgagaagtggtgactgtcgaagtaatcggaac |
11780609 |
T |
|
| Q |
313 |
cggaacccaagtccaagtacttccattggccgaagtggaag-ccccccatctgtgtgctgtcgagttattgtagggggtgctttctcagccacaacgatt |
411 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11780610 |
cggaacctaagtccaagtacttccattggccgaagtggaagcccccccatttgtgtgttgtcgagttattgtagggagtgctttctcagccacaacgatt |
11780709 |
T |
|
| Q |
412 |
tgtttcccacgctcatctttctcatttggctgttaaggatgtatcactcggcacgaggagacatta |
477 |
Q |
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||||||||||| |||||||| || ||||| |||| |||||||||| |||||| |||||||||||| |
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| T |
11780710 |
tgtttcccacgatcatctttatcctttggttgttgaggatgtatccatcggcaagaggagacatta |
11780775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 28 - 371
Target Start/End: Original strand, 17158744 - 17159087
Alignment:
| Q |
28 |
ggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaat |
127 |
Q |
| |
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||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
17158744 |
ggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatgtagtggaaagctgaaaggtgttgacgacaat |
17158843 |
T |
|
| Q |
128 |
gatgtcctaggcatagggaccgtcatatgagaagtaacaactgatgatgtagaattaacaaccggccccatgtgtgagctagcaataatagggtccggaa |
227 |
Q |
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|| ||| | ||||||||||| |||| |||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| || || |||||| |
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| T |
17158844 |
gacgtcttgggcatagggactgtcaactgagaagtaacaactgctgaagtagaagtaacaaccggccccatgtgtgagctagcaatagtacggaccggaa |
17158943 |
T |
|
| Q |
228 |
tagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaaccggaacccaagtcca |
327 |
Q |
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|||||||||||| | |||| ||||||||||||| |||||||||| || |||||||| ||||| ||| ||| ||||||||||||||||||||||||||| | |
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| T |
17158944 |
tagcctgagaagacagagccagtgttgaaggggtagtagtaaccagaactctctgaaaagtggtgactgttgaagtaatcggaaccggaacccaagtcga |
17159043 |
T |
|
| Q |
328 |
agtacttccattggccgaagtggaagccccccatctgtgtgctg |
371 |
Q |
| |
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||||| ||||||||| |||| |||||||||||| ||||||||| |
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| T |
17159044 |
ggtactgccattggccaaagttgaagccccccatatgtgtgctg |
17159087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 7e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 27 - 454
Target Start/End: Complemental strand, 12101867 - 12101440
Alignment:
| Q |
27 |
gggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
126 |
Q |
| |
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|||||| ||||||||||||| | || ||| || | |||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12101867 |
gggaaataatttcaaacactcgtgttgcttgtggtagctcctcgctagaaatattgttaaacacgttatgtagtggaaagctgaaagatgttgacgacaa |
12101768 |
T |
|
| Q |
127 |
tgatgtcctaggcatagggac-----cgtcatatgagaagtaacaactgatgatgtagaattaacaaccggccccatgtgtgagctagcaataatagggt |
221 |
Q |
| |
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||| ||| ||||||||| || | |||| || |||||| |||||| ||| ||||| | |||||||| ||||||| |||||| || ||||| |
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| T |
12101767 |
tgacgtcataggcatagtgattccttcatcatctgtgaagtatcaactgttgaagtagagtgaacaaccgaccccatgggtgagcaag------tagggg |
12101674 |
T |
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| Q |
222 |
ccggaatagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaaccggaaccca |
321 |
Q |
| |
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||||||||||| |||||||| |||| |||||||||||||||| ||| ||| || ||||||||| |||| ||| | ||||||||||| ||| ||||||||| |
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| T |
12101673 |
ccggaatagccagagaaggctgagccagtgttgaaggggcagaagtgaccagaactctctgagtagtggtgactatcgaagtaatcagaatcggaaccca |
12101574 |
T |
|
| Q |
322 |
agtccaagtacttccattggccgaagtggaagcc-ccccatctgtgtgctgtcgagttattgtagggggtgctttctcagccacaacgatttgtttccca |
420 |
Q |
| |
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|||||| ||||| |||||||| |||||||||||| |||||||| ||||||| |||||| || |||||||||||||||||||||||| |||||||| ||| |
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| T |
12101573 |
agtccaggtactgccattggctgaagtggaagcctccccatctatgtgctggcgagttgttttagggggtgctttctcagccacaataatttgttttcca |
12101474 |
T |
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| Q |
421 |
cgctcatctttctcatttggctgttaaggatgta |
454 |
Q |
| |
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|| |||||||| || |||||| ||| |||||||| |
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| T |
12101473 |
cgatcatctttatcctttggcggttgaggatgta |
12101440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 250 - 450
Target Start/End: Complemental strand, 14977410 - 14977209
Alignment:
| Q |
250 |
tgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaaccggaacccaagtccaagtacttccattggccgaagtg |
349 |
Q |
| |
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||||| || ||||| |||||| ||| |||||||||| || | |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||| |
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| T |
14977410 |
tgttgcagaggcagaagtaactggaactctctgagaggtagtaattgtcgaagtaatcggaaccggaacccaagtacaagtactgccattggctgaagtg |
14977311 |
T |
|
| Q |
350 |
gaagc-cccccatctgtgtgctgtcgagttattgtagggggtgctttctcagccacaacgatttgtttcccacgctcatctttctcatttggctgttaag |
448 |
Q |
| |
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||||| |||||||| | |||| ||||| | | ||||||| ||| |||| | |||| |||||||| ||||| |||| ||| ||||||||| ||| || |
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| T |
14977310 |
gaagctcccccatcattctgctttcgagatggtttagggggcgctgcctcaacgacaataatttgtttaccacgatcatttttatcatttggcggttgag |
14977211 |
T |
|
| Q |
449 |
ga |
450 |
Q |
| |
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|| |
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|
| T |
14977210 |
ga |
14977209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 14977595 - 14977470
Alignment:
| Q |
38 |
tcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaatgatgtcctag |
137 |
Q |
| |
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|||| |||||| |||||| | ||| || |||||||||||| | ||||||| ||| || | ||| ||||| ||||||||||| ||||| || ||||| | |
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| T |
14977595 |
tcaatcactggtgtagcttctggcaacttctcactagaaatactatcaaacatgttgtgtaatgggaagctaaaagatgttgatgacaaagacgtcctgg |
14977496 |
T |
|
| Q |
138 |
gcatagggaccgtcatatgagaagta |
163 |
Q |
| |
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||| ||||||| |||| ||||||||| |
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| T |
14977495 |
gcacagggaccatcatctgagaagta |
14977470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 11776668 - 11776713
Alignment:
| Q |
309 |
gaaccggaacccaagtccaagtacttccattggccgaagtggaagc |
354 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||||| ||||||| |
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| T |
11776668 |
gaaccggaacccacgtccaagcgcttccattggccgaaatggaagc |
11776713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 140467 - 140525
Alignment:
| Q |
299 |
gaagtaatcggaaccggaacccaagtccaagtacttccattggccgaagtggaagcccc |
357 |
Q |
| |
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|||||||| |||||||| | |||||||||||||| ||||||||||||||| |||||||| |
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| T |
140467 |
gaagtaataggaaccgggaaccaagtccaagtacctccattggccgaagttgaagcccc |
140525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 19069624 - 19069709
Alignment:
| Q |
41 |
aacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
126 |
Q |
| |
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|||||||||||||| || ||||||||| | |||||| ||||||||| | || || | ||||||||||||||| |||||||||| |
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| T |
19069624 |
aacactggcgtagcacgtggcagctccttaggagaaattttgtcaaacgcattgtgtaatggaaagctgaaagagtttgacgacaa |
19069709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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