View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4765_low_3 (Length: 413)

Name: NF4765_low_3
Description: NF4765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4765_low_3
NF4765_low_3
[»] chr3 (23 HSPs)
chr3 (65-249)||(7417754-7417938)
chr3 (72-250)||(8400810-8400988)
chr3 (72-249)||(35198721-35198898)
chr3 (65-249)||(22855843-22856027)
chr3 (72-222)||(50823681-50823831)
chr3 (72-222)||(50852029-50852179)
chr3 (76-249)||(34824512-34824685)
chr3 (72-237)||(52545289-52545454)
chr3 (76-238)||(55467966-55468129)
chr3 (76-234)||(43334057-43334215)
chr3 (111-250)||(48077979-48078118)
chr3 (65-176)||(22371721-22371832)
chr3 (72-158)||(37330606-37330692)
chr3 (79-220)||(50726003-50726144)
chr3 (79-220)||(50786704-50786845)
chr3 (72-158)||(37454743-37454829)
chr3 (73-158)||(30534902-30534987)
chr3 (72-182)||(19872482-19872592)
chr3 (92-190)||(29635883-29635981)
chr3 (72-146)||(25910665-25910739)
chr3 (77-231)||(42876189-42876343)
chr3 (169-250)||(39438915-39438996)
chr3 (72-116)||(773666-773710)
[»] chr7 (17 HSPs)
chr7 (72-249)||(35109647-35109824)
chr7 (73-249)||(38265237-38265413)
chr7 (76-249)||(16059356-16059529)
chr7 (72-249)||(34721790-34721967)
chr7 (72-249)||(21577097-21577274)
chr7 (72-238)||(41151139-41151306)
chr7 (76-249)||(38405157-38405330)
chr7 (72-246)||(45278411-45278585)
chr7 (76-249)||(18116947-18117120)
chr7 (78-249)||(11216725-11216896)
chr7 (77-211)||(12472115-12472249)
chr7 (72-192)||(245263-245383)
chr7 (72-187)||(37095209-37095324)
chr7 (76-246)||(48176359-48176529)
chr7 (72-204)||(23028684-23028816)
chr7 (157-249)||(40038621-40038713)
chr7 (72-173)||(28407540-28407637)
[»] chr4 (25 HSPs)
chr4 (76-249)||(51066449-51066622)
chr4 (76-249)||(46494401-46494574)
chr4 (73-251)||(36192496-36192673)
chr4 (72-249)||(39863777-39863954)
chr4 (103-249)||(8740404-8740550)
chr4 (72-249)||(7173584-7173761)
chr4 (72-249)||(50905704-50905881)
chr4 (72-226)||(30970383-30970537)
chr4 (72-225)||(51713964-51714117)
chr4 (72-243)||(32139126-32139297)
chr4 (76-238)||(2294719-2294875)
chr4 (72-176)||(29576444-29576548)
chr4 (72-177)||(55231715-55231820)
chr4 (72-190)||(2570216-2570334)
chr4 (72-145)||(22304090-22304163)
chr4 (76-179)||(41523423-41523526)
chr4 (72-211)||(47626992-47627133)
chr4 (72-163)||(676770-676861)
chr4 (75-163)||(51279035-51279123)
chr4 (72-172)||(4080551-4080651)
chr4 (77-141)||(37990599-37990663)
chr4 (103-194)||(50399672-50399763)
chr4 (76-138)||(23084468-23084530)
chr4 (102-210)||(22423371-22423479)
chr4 (210-249)||(51066205-51066244)
[»] chr8 (21 HSPs)
chr8 (72-252)||(19723264-19723444)
chr8 (72-249)||(11403957-11404134)
chr8 (72-250)||(32296638-32296816)
chr8 (73-249)||(4840096-4840272)
chr8 (72-250)||(22711464-22711642)
chr8 (72-249)||(11610236-11610413)
chr8 (72-224)||(29767169-29767319)
chr8 (76-248)||(28739564-28739736)
chr8 (129-249)||(27881044-27881164)
chr8 (129-249)||(28021225-28021345)
chr8 (76-187)||(17095568-17095679)
chr8 (72-250)||(30682794-30682971)
chr8 (106-249)||(24475029-24475172)
chr8 (72-225)||(41553265-41553418)
chr8 (72-172)||(36261679-36261779)
chr8 (93-176)||(21355004-21355087)
chr8 (72-172)||(43288105-43288205)
chr8 (76-159)||(11909426-11909509)
chr8 (72-133)||(27879559-27879620)
chr8 (72-133)||(28019740-28019801)
chr8 (178-248)||(6097521-6097591)
[»] scaffold0021 (1 HSPs)
scaffold0021 (72-249)||(107691-107867)
[»] chr2 (25 HSPs)
chr2 (72-249)||(40155996-40156173)
chr2 (72-249)||(10745231-10745408)
chr2 (72-249)||(17136343-17136520)
chr2 (72-249)||(44650349-44650526)
chr2 (72-252)||(5039373-5039553)
chr2 (84-250)||(6672804-6672970)
chr2 (72-252)||(25987660-25987841)
chr2 (72-249)||(36380131-36380308)
chr2 (72-212)||(45136969-45137109)
chr2 (72-249)||(2754050-2754227)
chr2 (72-223)||(36836328-36836479)
chr2 (75-249)||(30372682-30372856)
chr2 (72-249)||(2357075-2357251)
chr2 (72-249)||(7860145-7860322)
chr2 (72-233)||(21637869-21638030)
chr2 (72-251)||(26690108-26690287)
chr2 (72-213)||(33066582-33066723)
chr2 (72-182)||(558438-558548)
chr2 (72-238)||(3200849-3201014)
chr2 (65-225)||(13047148-13047303)
chr2 (72-249)||(21487106-21487282)
chr2 (84-237)||(4553569-4553723)
chr2 (172-250)||(2098939-2099017)
chr2 (72-122)||(2098825-2098875)
chr2 (135-190)||(20961496-20961551)
[»] chr5 (9 HSPs)
chr5 (76-251)||(20983006-20983181)
chr5 (72-250)||(17064278-17064456)
chr5 (72-221)||(37976530-37976683)
chr5 (72-239)||(41910792-41910957)
chr5 (7-56)||(31640331-31640380)
chr5 (153-249)||(35237103-35237199)
chr5 (275-316)||(31638152-31638193)
chr5 (72-188)||(5009416-5009531)
chr5 (78-140)||(31673894-31673956)
[»] chr1 (17 HSPs)
chr1 (76-249)||(30054445-30054618)
chr1 (72-250)||(20014413-20014591)
chr1 (72-249)||(45323962-45324139)
chr1 (74-249)||(30370061-30370236)
chr1 (72-250)||(12025136-12025314)
chr1 (84-246)||(21090074-21090236)
chr1 (72-225)||(4573359-4573512)
chr1 (73-250)||(33763254-33763431)
chr1 (74-218)||(30850841-30850985)
chr1 (73-180)||(22024128-22024235)
chr1 (72-176)||(14498078-14498182)
chr1 (76-237)||(35617948-35618104)
chr1 (159-249)||(15034411-15034501)
chr1 (84-161)||(35371756-35371833)
chr1 (85-193)||(44438562-44438670)
chr1 (72-179)||(33762539-33762646)
chr1 (73-133)||(17015192-17015252)
[»] chr6 (9 HSPs)
chr6 (72-249)||(35163749-35163926)
chr6 (73-237)||(19686827-19686991)
chr6 (72-249)||(2711739-2711910)
chr6 (72-182)||(20685348-20685458)
chr6 (72-182)||(17948703-17948813)
chr6 (151-246)||(14496311-14496406)
chr6 (72-249)||(14505524-14505698)
chr6 (84-178)||(15070152-15070246)
chr6 (102-187)||(24336633-24336718)
[»] scaffold0691 (1 HSPs)
scaffold0691 (97-250)||(6993-7142)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 65 - 249
Target Start/End: Complemental strand, 7417938 - 7417754
Alignment:
Q  65 ggtaaggaaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctca 164  Q
    |||||||||||||||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||||||||     
T  7417938 ggtaaggaaaattttagggtgaggggatggtgccccagtccaaggcagtgaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 7417839  T
Q  165 ctccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  7417838 ctccaaaggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 7417754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 8400988 - 8400810
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  8400988 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 8400889  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 250  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  8400888 ggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagttt 8400810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 72 - 249
Target Start/End: Complemental strand, 35198898 - 35198721
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||| || ||||    
T  35198898 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctgcaaa 35198799  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    |||| ||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  35198798 ggcattagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaagtt 35198721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 65 - 249
Target Start/End: Complemental strand, 22856027 - 22855843
Alignment:
Q  65 ggtaaggaaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctca 164  Q
    |||||||||||||||||| |||||||||||||  ||||||||||| |||||||||||| ||||| ||||||||||||||||  ||||||||||||||||     
T  22856027 ggtaaggaaaattttagggtgaggggatggtgctccagtccaaggcagggaagacctttgggcttaaagagcacttacaaaggtaattacatttacctcc 22855928  T
Q  165 ctccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    |||||||| ||||||||| ||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||  ||||||||||    
T  22855927 ctccaaagacactagcggggctcgaacctgggttctctcgaatttaagacctgtctttttaccactagaccaaacctttggagtt 22855843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 50823831 - 50823681
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  50823831 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 50823732  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttt 222  Q
    ||||||| |||  ||||||||||| |||||||||||||||||| |||||||    
T  50823731 ggcactaacgggactcgaacccggattctctcggattcaagacttgtcttt 50823681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 50852029 - 50852179
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  50852029 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 50852128  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttt 222  Q
    ||||||| |||  ||||||||||| |||||||||||||||||| |||||||    
T  50852129 ggcactaacgggactcgaacccggattctctcggattcaagacttgtcttt 50852179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 76 - 249
Target Start/End: Complemental strand, 34824685 - 34824512
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 175  Q
    ||||||| ||||||||||||| ||||||||||||  ||||||||||||||| |||||||||||||||||| ||||||||||||||||| || ||||||||    
T  34824685 ttttagggtgaggggatggtgccccagtccaaggccgggaagaccttcgggatcaaagagcacttacaaagataattacatttacctcccttcaaaggca 34824586  T
Q  176 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||| |||  ||||||| | ||||||||||||||||||| || |||||||| ||||||||||| |||||||||||    
T  34824585 ctaacgggactcgaactcaggttctctcggattcaagatctatctttttaccactagaccaaatctttggagtt 34824512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 72 - 237
Target Start/End: Complemental strand, 52545454 - 52545289
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||  |||||||||  || ||||||||||||| ||  |||    
T  52545454 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagactacttacaaaagtatttacatttacctccctttaaa 52545355  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaa 237  Q
    ||||||||||| |||||||||||  || |||||||||||||||||||| ||||||||| |||||||    
T  52545354 ggcactagcggggctcgaacccgaattttctcggattcaagacctgtcattttatcaccagaccaa 52545289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 76 - 238
Target Start/End: Complemental strand, 55468129 - 55467966
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcggg-ctcaaagagcacttacaaatataattacatttacctcactccaaaggc 174  Q
    ||||||| ||||||||||||| |||||||||||| || ||||||||||||| |||||||||||||||||||  || ||||||||||||| ||||||| ||    
T  55468129 ttttagggtgaggggatggtgccccagtccaaggcagagaagaccttcggggctcaaagagcacttacaaaggtatttacatttacctccctccaaacgc 55468030  T
Q  175 actagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaag 238  Q
    | ||| || |||||||||||| |||||||| ||||||||| |||| ||||| ||||||||||||    
T  55468029 attagtggggctcgaacccggattctctcgaattcaagacatgtcattttaccactagaccaag 55467966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 76 - 234
Target Start/End: Original strand, 43334057 - 43334215
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 175  Q
    ||||||| ||||||||||||  |||||||||||| |||||||||||||||||||||| ||||||||||||  || ||||||||||||| |||| ||| ||    
T  43334057 ttttagggtgaggggatggtaccccagtccaaggcagggaagaccttcgggctcaaatagcacttacaaaagtatttacatttacctccctcccaagaca 43334156  T
Q  176 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagac 234  Q
    ||||||| |||||||| ||||||||||||||||||| || |||| ||||| | ||||||    
T  43334157 ctagcggggctcgaactcgggttctctcggattcaaaacttgtcattttacctctagac 43334215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 111 - 250
Target Start/End: Original strand, 48077979 - 48078118
Alignment:
Q  111 agggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattca 210  Q
    ||||||||||||| ||||||||||||||||||||| ||| ||||||||||||  ||||||||||||||| |  ||||||||||| ||||||||| |||||    
T  48077979 agggaagaccttcaggctcaaagagcacttacaaagatatttacatttaccttcctccaaaggcactagtgaggctcgaacccgagttctctcgaattca 48078078  T
Q  211 agacctgtctttttatcactagaccaagtctttggagttt 250  Q
    ||||||||| ||||| |||||||||||| ||||| |||||    
T  48078079 agacctgtcattttaccactagaccaagcctttgaagttt 48078118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 22371721 - 22371832
Alignment:
Q  65 ggtaaggaaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctca 164  Q
    ||||||| |||||||||| ||||||||||||| ||||||| || | |||||||| ||||||| ||||||||||||||||||  ||||||||||||||||     
T  22371721 ggtaaggtaaattttagggtgaggggatggtgccccagtctaaagcagggaagatcttcgggttcaaagagcacttacaaaggtaattacatttacctcc 22371820  T
Q  165 ctccaaaggcac 176  Q
    ||||||||||||    
T  22371821 ctccaaaggcac 22371832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 37330606 - 37330692
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacattt 158  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||  |||||||||||    
T  37330606 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtaattacattt 37330692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 79 - 220
Target Start/End: Original strand, 50726003 - 50726144
Alignment:
Q  79 taggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcacta 178  Q
    |||| ||| ||||||||| |||| ||||| ||||||||||| ||||  |||||| || |||||||||  |||||| ||||||||  |||||||| |||||    
T  50726003 tagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttcctccaaagacacta 50726102  T
Q  179 gcggagctcgaacccgggttctctcggattcaagacctgtct 220  Q
     ||| |||||||||||  ||||||||||||||||||||||||    
T  50726103 acggggctcgaacccgaattctctcggattcaagacctgtct 50726144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 79 - 220
Target Start/End: Complemental strand, 50786845 - 50786704
Alignment:
Q  79 taggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcacta 178  Q
    |||| ||| ||||||||| |||| ||||| ||||||||||| ||||  |||||| || |||||||||  |||||| ||||||||  |||||||| |||||    
T  50786845 tagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttcctccaaagacacta 50786746  T
Q  179 gcggagctcgaacccgggttctctcggattcaagacctgtct 220  Q
     ||| |||||||||||  ||||||||||||||||||||||||    
T  50786745 acggggctcgaacccgaattctctcggattcaagacctgtct 50786704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 37454743 - 37454829
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacattt 158  Q
    ||||||||||| ||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  37454743 aaaattttagggtgaggggatggtgccccaatctaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattatattt 37454829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 30534902 - 30534987
Alignment:
Q  73 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacattt 158  Q
    |||||||||| ||||||||||||  |||||||||||| |||||||| ||||||||||||||||||||||||||  |||||||||||    
T  30534902 aaattttagggtgaggggatggtaccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacattt 30534987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 182
Target Start/End: Original strand, 19872482 - 19872592
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||  |||||||||||||||  |||||||| |||||||||  ||||||  |||||||  |||||||    
T  19872482 aaaattttaggatgaggggatggtgccccagtccaagacagggaagaccttcggattcaaagagtacttacaaaggtaattaattttaccttcctccaaa 19872581  T
Q  172 ggcactagcgg 182  Q
    ||||| |||||    
T  19872582 ggcacaagcgg 19872592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 29635981 - 29635883
Alignment:
Q  92 tggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaa 190  Q
    ||||| |||| ||||||| ||||||||| |||||||| ||||||||||||||||  |||||||||||||||| || ||||||||||||||  |||||||    
T  29635981 tggtgccccactccaaggcagggaagacattcgggcttaaagagcacttacaaaggtaattacatttacctcccttcaaaggcactagcgaggctcgaa 29635883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 25910665 - 25910739
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaat 146  Q
    ||||||||||| ||||||||||||| | |||||||||| |||||||| |||||| ||||||||||||||||||||    
T  25910665 aaaattttagggtgaggggatggtgcctcagtccaaggcagggaagatcttcggactcaaagagcacttacaaat 25910739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 231
Target Start/End: Complemental strand, 42876343 - 42876189
Alignment:
Q  77 tttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcac 176  Q
    |||||| |||| |||||||| || |||||||| |||||||||| |||  | ||||||||||||||||||  ||||||||||||||||  || |||| |||    
T  42876343 tttagggtgagaggatggtgccctagtccaagatagggaagacattcaagttcaaagagcacttacaaaggtaattacatttacctccatctaaagacac 42876244  T
Q  177 tagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcacta 231  Q
    |||  | |||||||| || | || |||| || ||||| || |||||||| |||||    
T  42876243 tagtcgggctcgaactcgagatccctcgaatacaagatctatctttttaccacta 42876189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 39438915 - 39438996
Alignment:
Q  169 aaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 250  Q
    |||||||||||||||  | ||||| || ||||||||||||||||| ||||||||||| ||||| | |||| ||||| |||||    
T  39438915 aaaggcactagcggaatttgaacctggattctctcggattcaagatctgtctttttaacactatagcaagcctttgaagttt 39438996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 773710 - 773666
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaa 116  Q
    |||||| |||| ||||||||||||| |||||||||||| ||||||    
T  773710 aaaattctagggtgaggggatggtgccccagtccaaggaagggaa 773666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 72 - 249
Target Start/End: Complemental strand, 35109824 - 35109647
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  35109824 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 35109725  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  35109724 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 35109647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 73 - 249
Target Start/End: Original strand, 38265237 - 38265413
Alignment:
Q  73 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 172  Q
    |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  38265237 aaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 38265336  T
Q  173 gcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  38265337 gcactagcggggctcgaacccaggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 38265413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 76 - 249
Target Start/End: Original strand, 16059356 - 16059529
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 175  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| || ||||||||    
T  16059356 ttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcagagagcacttacaaaggtaattacatttacctccctgcaaaggca 16059455  T
Q  176 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||    
T  16059456 ctagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagtccaagcctttggagtt 16059529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 72 - 249
Target Start/End: Complemental strand, 34721967 - 34721790
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| || ||||||||| ||||||| |||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  34721967 aaaattttagggtgaggggatggtgcccgagtccaaggcagggaagtccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 34721868  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  34721867 ggcactagcggggcttgaatccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 34721790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 21577097 - 21577274
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||  || ||||||||||||| |||||||    
T  21577097 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtatttacatttacctccctccaaa 21577196  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    |||| ||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  21577197 ggcattagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaagtt 21577274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 72 - 238
Target Start/End: Complemental strand, 41151306 - 41151139
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaata-taattacatttacctcactccaa 170  Q
    |||| |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||   |||||||||||||||| ||||||    
T  41151306 aaaaatttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaaggtaattacatttacctccctccaa 41151207  T
Q  171 aggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaag 238  Q
    || ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41151206 agacactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaag 41151139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 76 - 249
Target Start/End: Original strand, 38405157 - 38405330
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 175  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||    
T  38405157 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaagataattacatttacctccctccaaaggca 38405256  T
Q  176 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||  |||||||| ||  ||||||||||||||||||||||||||||| |||||||| ||| ||||| ||||    
T  38405257 ctagcgaggctcgaactcgaattctctcggattcaagacctgtctttttaccactagacgaagcctttgaagtt 38405330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 72 - 246
Target Start/End: Complemental strand, 45278585 - 45278411
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| |||||||||||||  ||||||||||| ||||||||| |||||| | |||||||||||||||| |||||||||||||| || || ||||    
T  45278585 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagacattcgggtttaaagagcacttacaaagataattacatttacttcccttcaaa 45278486  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttgga 246  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| |||||||    
T  45278485 ggcactagcggggctcgaacccgggttatctcggattcaagacctatctttttaccactagaccaagactttgga 45278411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 76 - 249
Target Start/End: Original strand, 18116947 - 18117120
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 175  Q
    ||||||| ||||||||||||| |||||||||||| |||||||| |||||  |||||||||||| ||||||  |||||||||||||||| ||| |||||||    
T  18116947 ttttagggtgaggggatggtgccccagtccaaggcagggaagatcttcgacctcaaagagcacctacaaaggtaattacatttacctccctctaaaggca 18117046  T
Q  176 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||    
T  18117047 ctagcgtggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaacaagcctttggagtt 18117120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 11216896 - 11216725
Alignment:
Q  78 ttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcact 177  Q
    ||||| |||||| ||| || || ||||||| |||| ||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||||||||    
T  11216896 ttagggtgagggaatgatgccctagtccaaagtagagaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcact 11216797  T
Q  178 agcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    |  || |||||||||||||||||||| |||||||||||||||  |||| |||||||||||  ||||||||||    
T  11216796 aatggggctcgaacccgggttctctcagattcaagacctgtcactttaccactagaccaaacctttggagtt 11216725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 77 - 211
Target Start/End: Complemental strand, 12472249 - 12472115
Alignment:
Q  77 tttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcac 176  Q
    |||||| ||||||||||||  |||||||||||  |||||||||||||| ||||||||||||||||||||  |||||| ||||||||| ||||||||||||    
T  12472249 tttagggtgaggggatggtaccccagtccaagacagggaagaccttcgtgctcaaagagcacttacaaaggtaattatatttacctccctccaaaggcac 12472150  T
Q  177 tagcggagctcgaacccgggttctctcggattcaa 211  Q
    ||| || ||||||||||||||||||||||||||||    
T  12472149 tagtggggctcgaacccgggttctctcggattcaa 12472115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 72 - 192
Target Start/End: Original strand, 245263 - 245383
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||     
T  245263 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgtttacaaagataattacatttacctccctccaag 245362  T
Q  172 ggcactagcggagctcgaacc 192  Q
    ||||||||||| |||||||||    
T  245363 ggcactagcggggctcgaacc 245383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 37095209 - 37095324
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  37095209 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 37095308  T
Q  172 ggcactagcggagctc 187  Q
    | ||||||||| ||||    
T  37095309 gacactagcggggctc 37095324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 76 - 246
Target Start/End: Complemental strand, 48176529 - 48176359
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggt-agggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggc 174  Q
    ||||||| ||||||||||||| ||||||||||||  |||||| |||||| |||||||| | ||||||||||  || |||||||||||||  |||||||||    
T  48176529 ttttagggtgaggggatggtgccccagtccaaggggagggaaaaccttccggctcaaaaaacacttacaaaagtatttacatttacctccttccaaaggc 48176430  T
Q  175 actagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttgga 246  Q
    |||||||| |||||||||||| |||||||||||| |||| ||||||||||| || ||||||||| |||||||    
T  48176429 actagcggggctcgaacccggattctctcggatttaagatctgtctttttacca-tagaccaagcctttgga 48176359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 23028816 - 23028684
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| |||| |||||||| | ||||| |||||||||||| |||||||| ||||| | |||||| |||  ||||||||||||| || ||| |||    
T  23028816 aaaattttaggatgagaggatggtgtctcagtctaaggtagggaaggccttcgggttcaaaaaacacttataaaggtaattacatttacatccctctaaa 23028717  T
Q  172 ggcactagcggagctcgaacccgggttctctcg 204  Q
    |||| ||| |||| |||||||||| ||||||||    
T  23028716 ggcattagaggagttcgaacccggattctctcg 23028684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 40038713 - 40038621
Alignment:
Q  157 ttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||| || ||||||||||| |||  || |||  | ||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  40038713 ttacctctcttcaaaggcactaacgggacttgaattcaggttctctcagattcaagacctgtctttttaccactagatcaagtctttggagtt 40038621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 173
Target Start/End: Complemental strand, 28407637 - 28407540
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||| |||||||   |    ||||||||||||||||||||||||||||  || ||||||||||||| ||| |||    
T  28407637 aaaattttagggtgaggggatggtgccccaatccaaggcttg----accttcgggctcaaagagcacttacaaaagtatttacatttacctccctctaaa 28407542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 76 - 249
Target Start/End: Complemental strand, 51066622 - 51066449
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 175  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||| ||||||||| |||||||||||    
T  51066622 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattatatttacctccctccaaaggca 51066523  T
Q  176 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51066522 ctagcggagctcgaacccgagttctctcggattcaagacctgtctttttaccactagaccaagtctttggagtt 51066449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 76 - 249
Target Start/End: Original strand, 46494401 - 46494574
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 175  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||||||    
T  46494401 ttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 46494500  T
Q  176 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    |||| || |||||||||||||||||||||||||||||||||||| ||||| |||||||||||  ||||||||||    
T  46494501 ctagtggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaaacctttggagtt 46494574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 73 - 251
Target Start/End: Complemental strand, 36192673 - 36192496
Alignment:
Q  73 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 172  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||| ||||||||    
T  36192673 aaattttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcatttacaaaagtaattacatttacctccctccaaag 36192574  T
Q  173 gcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtttt 251  Q
    ||||||| || ||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||  ||||||||||||    
T  36192573 gcactagtggggctcgaacccgggttctctcgaattcaagacctgtctttttaccac-agactaaacctttggagtttt 36192496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 39863777 - 39863954
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||| ||| | ||||||||||||| ||||||||||||| ||||||||||||||||||  ||||||||||||| || |||||||    
T  39863777 aaaattttagggtgaggggatagtgtctcagtccaaggtagagaagaccttcgggttcaaagagcacttacaaaggtaattacatttacttccctccaaa 39863876  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||||||| |  ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  39863877 ggcactagcggggtccgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 39863954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 103 - 249
Target Start/End: Complemental strand, 8740550 - 8740404
Alignment:
Q  103 tccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctct 202  Q
    ||||||| | |||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||||||||||||| ||||||||||||| |||||    
T  8740550 tccaaggcatggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcgaacccgggatctct 8740451  T
Q  203 cggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  8740450 cggattcaagacctgtctttttaccactagaccaagcctttggagtt 8740404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 7173584 - 7173761
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||  || | |||||||||||  ||||||    
T  7173584 aaaattttagggtgaggggatggtgccccagtccaacgcagggaagaccttcgggctcaaagagcacttacaaaggtattgacatttacctccttccaaa 7173683  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    |||||||||||  || |||||  ||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  7173684 ggcactagcgggtcttgaacctaggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagtt 7173761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 72 - 249
Target Start/End: Complemental strand, 50905881 - 50905704
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| |||  |||||||| |||||| ||||| | ||||||||||||| |||||||||||| |||||| ||||||||||||||||| |||||||    
T  50905881 aaaattttagggtgaaaggatggtgccccagttcaaggcatggaagaccttcggactcaaagagcacctacaaagataattacatttacctctctccaaa 50905782  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||||||| |||||||||| | ||||||||||||||||||||||||||||| |||||||| ||  ||||||||||    
T  50905781 ggcactagcggggctcgaacccagattctctcggattcaagacctgtctttttaccactagactaaacctttggagtt 50905704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 72 - 226
Target Start/End: Original strand, 30970383 - 30970537
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||  || ||||||||||||| || ||||    
T  30970383 aaaattttagggtgaggggatggtgccccagtctaaggtagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctcccttcaaa 30970482  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttat 226  Q
    |||||||| |  |||||||||||| ||||||||||||||||||||||| ||||||    
T  30970483 ggcactagtgaggctcgaacccggattctctcggattcaagacctgtcattttat 30970537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 72 - 225
Target Start/End: Original strand, 51713964 - 51714117
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||| ||| | |||||||||||||||||||||||||||||||||||  || ||| ||||||||| || ||||    
T  51713964 aaaattttagggtgaggggatggtgccccagttcaaagcagggaagaccttcgggctcaaagagcacttacaaaggtatttatatttacctcccttcaaa 51714063  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttta 225  Q
    |||||||| || |||||||||||||||||||||||||||||||||||| |||||    
T  51714064 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtcatttta 51714117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 72 - 243
Target Start/End: Complemental strand, 32139297 - 32139126
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    |||| |||||| ||| ||||||||| |||||||||||| || |||||||||| |||||||||| ||||||||||  |||||||||||||||| |||||||    
T  32139297 aaaaatttagggtgaagggatggtgccccagtccaaggcagagaagaccttcaggctcaaagaacacttacaaaggtaattacatttacctccctccaaa 32139198  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtcttt 243  Q
    | ||||||||| | |||||||| |||||||||||||||| |||||||| ||||| |||||||||||| ||||    
T  32139197 gacactagcggggttcgaacccaggttctctcggattcatgacctgtccttttaccactagaccaagccttt 32139126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 2294719 - 2294875
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 175  Q
    ||||||| ||||||||||||| ||||||| |||| || |||||| ||||||||||| || |||||       |||||||||||||||  |||||||||||    
T  2294719 ttttagggtgaggggatggtgccccagtctaaggcagtgaagactttcgggctcaacgaacacttg------taattacatttaccttcctccaaaggca 2294812  T
Q  176 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaag 238  Q
    |||||| | |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  2294813 ctagcgaaactcgaacccgagttctctcgaattcaagacctgtctttttaccactagaccaag 2294875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 72 - 176
Target Start/End: Complemental strand, 29576548 - 29576444
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  29576548 aaaattttagggtgagggggtggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaagttatttacatttacctccctccaaa 29576449  T
Q  172 ggcac 176  Q
    |||||    
T  29576448 ggcac 29576444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 55231820 - 55231715
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||||||||  || ||||||||||||| || ||||    
T  55231820 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagacattcaggctcaaagagcacttacaaaagtatttacatttacctcccttcaaa 55231721  T
Q  172 ggcact 177  Q
    ||||||    
T  55231720 ggcact 55231715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 2570334 - 2570216
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||| |||||| |||||||| || ||| ||  ||| ||| ||||||||| |||||||    
T  2570334 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagatcttcggactcaaagaacatttataatgatatttatatttacctccctccaaa 2570235  T
Q  172 ggcactagcggagctcgaa 190  Q
    ||||| |||||||||||||    
T  2570234 ggcaccagcggagctcgaa 2570216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 22304090 - 22304163
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaa 145  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22304090 aaaattttagggtgagaggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaa 22304163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 41523526 - 41523423
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 175  Q
    ||||||| ||| ||||||||| |||| |||||| ||||||||||||||| |||||||||||||||| |||  || ||||||||||||| |||||||| ||    
T  41523526 ttttaggatgaagggatggtgtcccaatccaagatagggaagaccttcgagctcaaagagcacttataaaggtatttacatttacctccctccaaagaca 41523427  T
Q  176 ctag 179  Q
    ||||    
T  41523426 ctag 41523423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 211
Target Start/End: Original strand, 47626992 - 47627133
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||| |||||||  ||||||||||| |||||||||||||| | |||||||| | ||| | |  || ||||||||||||| || ||||    
T  47626992 aaaattttagggtgaggagatggtgttccagtccaaggcagggaagaccttcgagttcaaagagtatttatagaggtatttacatttacctcccttcaaa 47627091  T
Q  172 ggcactagcggag--ctcgaacccgggttctctcggattcaa 211  Q
    |||||||| || |  |||||| ||||||||||||||||||||    
T  47627092 ggcactagtggggctctcgaatccgggttctctcggattcaa 47627133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 676861 - 676770
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctc 163  Q
    ||||||||| | | |||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||  || ||||| |||||||    
T  676861 aaaattttaaggtaaggggatggtgttacagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacacttacctc 676770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 51279035 - 51279123
Alignment:
Q  75 attttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctc 163  Q
    |||||||| ||||||||||||| |  | |||||||| ||||||||||| ||||||||||||||||||||||  || ||||||| |||||    
T  51279035 attttagggtgaggggatggtgccttaatccaaggttgggaagacctttgggctcaaagagcacttacaaaagtatttacattgacctc 51279123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 172
Target Start/End: Original strand, 4080551 - 4080651
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||| |  ||||||||||||  ||| ||||||  || |||||| ||| | ||||||||||| |||||||| |||||||||||||||| |||||||    
T  4080551 aaaattttaaggcgaggggatggtgctccaatccaagacagagaagacattcagactcaaagagcatttacaaatgtaattacatttacctccctccaaa 4080650  T
Q  172 g 172  Q
    |    
T  4080651 g 4080651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 37990599 - 37990663
Alignment:
Q  77 tttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcactta 141  Q
    |||||| |||||| |||||| ||||||||||||||||||||| |||| ||||||||||| |||||    
T  37990599 tttaggatgagggaatggtgccccagtccaaggtagggaagatcttcaggctcaaagagtactta 37990663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 50399672 - 50399763
Alignment:
Q  103 tccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccg 194  Q
    |||||||||| |||||| ||  |||||||||| ||||||||||  || ||||||||||||  ||||||  |||||||||| |||||||||||    
T  50399672 tccaaggtagagaagacatttaggctcaaagaacacttacaaaggtatttacatttaccttcctccaagagcactagcggggctcgaacccg 50399763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 23084468 - 23084530
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcac 138  Q
    ||||||| ||||| ||||||  |||||| ||||||||||||||||||||| ||||||||||||    
T  23084468 ttttagggtgaggagatggtaccccagttcaaggtagggaagaccttcggactcaaagagcac 23084530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 22423479 - 22423371
Alignment:
Q  102 gtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctc 201  Q
    |||||| | ||||||||||||||  | |||||| ||||||||||  || ||||||||||||| ||||||||| |||| | | ||||||| ||| | ||||    
T  22423479 gtccaaagcagggaagaccttcgaacacaaagaacacttacaaaagtatttacatttacctccctccaaaggtactaaccgggctcgaatccgagatctc 22423380  T
Q  202 tcggattca 210  Q
    || ||||||    
T  22423379 tcagattca 22423371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 51066244 - 51066205
Alignment:
Q  210 aagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  51066244 aagacttgtctttttaccactagaccaagtctttggagtt 51066205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 5e-69; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 72 - 252
Target Start/End: Complemental strand, 19723444 - 19723264
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||| ||| ||||||||||||||||||||||  |||||||||||||||| |||||||    
T  19723444 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagatctttgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 19723345  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttttt 252  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  19723344 ggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaaacctttggagttttt 19723264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 72 - 249
Target Start/End: Complemental strand, 11404134 - 11403957
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  11404134 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 11404035  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    | ||||||||  |||||||||| |||||||||| |||||||||||||| ||||| |||||||||||||||||||||||    
T  11404034 gacactagcgaggctcgaacccaggttctctcgaattcaagacctgtcattttaccactagaccaagtctttggagtt 11403957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 32296638 - 32296816
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| || ||||    
T  32296638 aaaattttagggtgaggggatggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcccttcaaa 32296737  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 250  Q
    ||||||||| | ||| ||||||||||||||||  |||||||||||||||||||| |||||||||||  |||||||||||    
T  32296738 ggcactagcagggcttgaacccgggttctctcaaattcaagacctgtctttttaccactagaccaaacctttggagttt 32296816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 73 - 249
Target Start/End: Complemental strand, 4840272 - 4840096
Alignment:
Q  73 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 172  Q
    |||||||||| ||||||||||||| || ||||||||| |||||||||||| || ||||||||||||||||||   |||| ||||||||||| ||||||||    
T  4840272 aaattttagggtgaggggatggtgccctagtccaaggcagggaagacctttggactcaaagagcacttacaatggtaatgacatttacctccctccaaag 4840173  T
Q  173 gcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    |||||||||| |||||||||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||    
T  4840172 gcactagcggggctcgaacccgggttctctcggattcaaaacctatctttttaccactagaccaagcctttggagtt 4840096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 22711642 - 22711464
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  22711642 aaaattttaggatgaggggatggtgccccagtccaaggcaaggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 22711543  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 250  Q
    |||| |||  |  ||| |||||| |||||||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  22711542 ggcattagttggactcaaacccgagttctctcggattcaagacctgtctttttaccactagaccaaacctttggagttt 22711464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 72 - 249
Target Start/End: Complemental strand, 11610413 - 11610236
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| ||||||||||| || | |||||||||||||| ||| |||||||||||| ||| ||| ||||||||  |||||||    
T  11610413 aaaattttagggtgaggggatggtgccccagtccaagataagtaagaccttcgggcttaaacagcacttacaaagatatttatatttacctttctccaaa 11610314  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||||||  ||||||| ||| | |||||||||||||||||||||||||||| |||||||||||  ||||||||||    
T  11610313 ggcactagcgaggctcgaatccgagatctctcggattcaagacctgtctttttaccactagaccaaacctttggagtt 11610236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 29767319 - 29767169
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||  |||||  ||||||||| || ||||    
T  29767319 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagaacacttacaaaggtaatt--atttacctcccttcaaa 29767222  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttt 224  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||||||||||||    
T  29767221 ggcactagcggggctcgaccccgggttctctcagattcaagacctgtcttttt 29767169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 76 - 248
Target Start/End: Original strand, 28739564 - 28739736
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 175  Q
    ||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||| |  |||||||||||    
T  28739564 ttttagggtgaggggatggtgctgcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttactttcctccaaaggca 28739663  T
Q  176 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagt 248  Q
    |||| || ||| |||||| |||||||| | |||||||||||||| ||||| |||||||||||| |||||||||    
T  28739664 ctagtggggcttgaacccaggttctctagaattcaagacctgtcattttaccactagaccaagcctttggagt 28739736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 129 - 249
Target Start/End: Original strand, 27881044 - 27881164
Alignment:
Q  129 caaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatca 228  Q
    |||||||||||||||||  || ||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||    
T  27881044 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctgtcattttacca 27881143  T
Q  229 ctagaccaagtctttggagtt 249  Q
    |||||||||| ||||||||||    
T  27881144 ctagaccaagcctttggagtt 27881164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 129 - 249
Target Start/End: Original strand, 28021225 - 28021345
Alignment:
Q  129 caaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatca 228  Q
    |||||||||||||||||  || ||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||    
T  28021225 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctgtcattttacca 28021324  T
Q  229 ctagaccaagtctttggagtt 249  Q
    |||||||||| ||||||||||    
T  28021325 ctagaccaagcctttggagtt 28021345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 76 - 187
Target Start/End: Complemental strand, 17095679 - 17095568
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 175  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||  |||||||||||||||| |||||||||||    
T  17095679 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 17095580  T
Q  176 ctagcggagctc 187  Q
    ||||||| ||||    
T  17095579 ctagcggggctc 17095568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 30682971 - 30682794
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||| | ||||||||||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||  || ||||||||| ||| |||||||    
T  30682971 aaaattttaaggtgaggggatggtg-cccagtccaaggcagggaagatcttcgggctcaaagaacacttacaaaagtatttacatttatctctctccaaa 30682873  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 250  Q
    ||||| || || |||||||| |||| ||||| | |||||||| ||| | || || |||||||||||| |||||||||||    
T  30682872 ggcaccagtggggctcgaacacgggctctcttgaattcaagaactgccattgtaccactagaccaagcctttggagttt 30682794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 106 - 249
Target Start/End: Original strand, 24475029 - 24475172
Alignment:
Q  106 aaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcgg 205  Q
    |||| ||| |||||||||||||||||||| ||||||||||  || ||||||||||||| ||||||||||||||||||||||||||  ||  |||| ||||    
T  24475029 aaggcaggaaagaccttcgggctcaaagaacacttacaaaggtatttacatttacctccctccaaaggcactagcggagctcgaattcgaattctatcgg 24475128  T
Q  206 attcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    |||||||||||||| | |||  ||||||||||| ||||||||||    
T  24475129 attcaagacctgtcatcttactactagaccaagcctttggagtt 24475172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 72 - 225
Target Start/End: Complemental strand, 41553418 - 41553265
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| |||||||||||||  |||||| |||| |||||||||||||| ||||||||| ||||||||||  || |||||||||| |  |||||||    
T  41553418 aaaattttagggtgaggggatggtgctccagtctaaggcagggaagaccttcgagctcaaagaacacttacaaaggtatttacatttacgttcctccaaa 41553319  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttta 225  Q
    | || ||| ||  ||||||| |||||||||||| ||||||||||| || |||||    
T  41553318 gacattagtgggactcgaactcgggttctctcgaattcaagacctatcatttta 41553265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 36261779 - 36261679
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||| | ||||||||||||| |||||| ||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  36261779 aaaattttaaggtgaggggatggtgccccagttcaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 36261680  T
Q  172 g 172  Q
    |    
T  36261679 g 36261679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 21355004 - 21355087
Alignment:
Q  93 ggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcac 176  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  21355004 ggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 21355087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 43288205 - 43288105
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    |||| |||||| |||||||||||||  ||||||||||| ||||||||||||||| |||||| | || |||||||  |||||||||||||||| |||||||    
T  43288205 aaaaatttagggtgaggggatggtgctccagtccaaggcagggaagaccttcggactcaaaaatcaattacaaaggtaattacatttacctccctccaaa 43288106  T
Q  172 g 172  Q
    |    
T  43288105 g 43288105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 11909426 - 11909509
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacattta 159  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||| |||  || |||||||||    
T  11909426 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttagaaaggtatttacattta 11909509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 27879559 - 27879620
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaag 133  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||||||||    
T  27879559 aaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 27879620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 28019740 - 28019801
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaag 133  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||||||||    
T  28019740 aaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 28019801  T

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Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 6097591 - 6097521
Alignment:
Q  178 agcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagt 248  Q
    ||||| |||||||| ||| |||||||| |||||||||||||||||||| ||  ||||||||  ||||||||    
T  6097591 agcggggctcgaactcggattctctcgaattcaagacctgtctttttaccataagaccaagcttttggagt 6097521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 107691 - 107867
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    |||||||||||| |||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  107691 aaaattttaggt-gaggggatggtgccccagtccaaggcagggtagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 107789  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||||||| |||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  107790 ggcactagcggggctcgaactcgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 107867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 72 - 249
Target Start/End: Complemental strand, 40156173 - 40155996
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||| | ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  40156173 aaaattttatggtgaggggatggtgccccagttcaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 40156074  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||  ||||||||||    
T  40156073 ggcactagcggggctcgaacccggattctctcggattcaagacctgtctttttaccactagaccaaacctttggagtt 40155996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 10745231 - 10745408
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||| |||||||||||||||||| ||||||||||||||||| ||| |||    
T  10745231 aaaattttagggtgaggggatggtgccccagtccaaggcagggaataccttcgggttcaaagagcacttacaaagataattacatttacctccctctaaa 10745330  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||||    
T  10745331 ggcactagcggggctcggacccgggttctctcgaattcaagacctgtctttttaccactaaaccaagcctttggagtt 10745408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 72 - 249
Target Start/End: Complemental strand, 17136520 - 17136343
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  17136520 aaaattttagggtgaggggatggtgccccagtccaaggcggggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 17136421  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||| ||| |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||    
T  17136420 ggcactaacggggctcgaacccgggttctctcagattcaaaacctgtcattttatcactagaccaagcctttggagtt 17136343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 72 - 249
Target Start/End: Complemental strand, 44650526 - 44650349
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| ||| |||||||| |||||||| |||||| |||||||||||||||||||  |||||||||||||||| |||||||    
T  44650526 aaaattttagggtgaggggatggtgccccggtccaaggcagggaagatcttcggactcaaagagcacttacaaaggtaattacatttacctccctccaaa 44650427  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||| |||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  44650426 ggcactaacggagctcgaaatcgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 44650349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 72 - 252
Target Start/End: Complemental strand, 5039553 - 5039373
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||  ||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||  ||||||| |||||||| ||| |||    
T  5039553 aaaattttagagtgaggggatggtgccctagtccaaggtagggaagatcttcgggctcaaagagcacttacaaaggtaattacgtttacctccctctaaa 5039454  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttttt 252  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||    
T  5039453 agcactagcggagctcgaacccgagttctctcggattcaagacctgtctttttaccactataccaagcctttggagttttt 5039373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 84 - 250
Target Start/End: Original strand, 6672804 - 6672970
Alignment:
Q  84 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcgga 183  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||  |||||||||||||||| ||||||||||||||||||     
T  6672804 tgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgcgtacaaaggtaattacatttacctccctccaaaggcactagcggg 6672903  T
Q  184 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 250  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  6672904 gcttgaacccgggttctctcggattcaagacctgtctttttaccactagaccaaacctttggagttt 6672970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 72 - 252
Target Start/End: Original strand, 25987660 - 25987841
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaa-gaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaa 170  Q
    ||||||||||| ||||||||||||| ||||| |||||| |||||| ||||||||| |||||||||||||||||||  |||||||||||||||| ||||||    
T  25987660 aaaattttagggtgaggggatggtgccccagaccaaggcagggaaagaccttcggactcaaagagcacttacaaaggtaattacatttacctccctccaa 25987759  T
Q  171 aggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttttt 252  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || |  | |||| |||||||||||||    
T  25987760 aggcactagcggggctcgaacccgagttctctcggattcaagacctgtctttttaccattgtatcaagcctttggagttttt 25987841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 36380131 - 36380308
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||    
T  36380131 aaaattttagggtgaggggatggtgcctcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaagggaattacatttacctccctccaaa 36380230  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||||||| | || |||||| ||| ||||| ||||||||||||||| |||| |||||||||||| ||||| ||||    
T  36380231 ggcactagcggggttcaaacccgagttttctcgaattcaagacctgtctgtttaccactagaccaagcctttgaagtt 36380308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 45136969 - 45137109
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  45136969 aaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 45137068  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaag 212  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  45137069 ggcactagcggggctcgaacccgggttctctcggattcaag 45137109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 2754050 - 2754227
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||  || ||||||||||||| |||||||    
T  2754050 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaa 2754149  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    |||| ||| ||  |||||| |||||||||||||||||||||||||||| ||||| ||||| |||||| ||||| ||||    
T  2754150 ggcattagtgggactcgaatccgggttctctcggattcaagacctgtcattttaccactaaaccaagcctttgaagtt 2754227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 36836328 - 36836479
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||| | ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  36836328 aaaattttaaggtgaggggatggtgccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 36836427  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttt 223  Q
    ||||| |||||  ||||||| |||||||||||||||||||||||||||||||    
T  36836428 ggcaccagcgggactcgaactcgggttctctcggattcaagacctgtctttt 36836479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 75 - 249
Target Start/End: Original strand, 30372682 - 30372856
Alignment:
Q  75 attttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggc 174  Q
    |||||||| |||||| |||||  |||||| ||||| | ||||||||||||||||||||||||||| ||||| ||| |||||||||||||  |||||||||    
T  30372682 attttagggtgagggtatggtaccccagttcaaggcatggaagaccttcgggctcaaagagcactaacaaagatatttacatttacctccttccaaaggc 30372781  T
Q  175 actagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||||||||||||||| || ||||||| ||||||||||| |||||||| |||||||||||  ||||||||||    
T  30372782 actagcggagctcgaacccaggatctctcgaattcaagacctatctttttaccactagaccaaacctttggagtt 30372856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 2357075 - 2357251
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| | ||||||||||||  |||||| |||| ||||||   || ||||||||||||| |||||||    
T  2357075 aaaattttagggtgaggggatggtgccccagtccaaggcatggaagaccttcgaactcaaa-agcatttacaatggtatttacatttacctccctccaaa 2357173  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    || ||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  2357174 ggtactagtggaactcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagtt 2357251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 7860145 - 7860322
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    |||||||||||  ||||||||| || | |||||||||| || ||| | ||||||||||||||| ||||||||||| ||  |||||||||||| |||||||    
T  7860145 aaaattttagggagaggggatgatgcctcagtccaaggcagagaaaatcttcgggctcaaagaacacttacaaatgtatgtacatttacctccctccaaa 7860244  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  7860245 ggcactagcggggctcaaacccaggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagtt 7860322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 72 - 233
Target Start/End: Complemental strand, 21638030 - 21637869
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| || ||||||||| || ||||||||| ||||||||||||||||||||||  || ||||||||||||| |||||||    
T  21638030 aaaattttagggtgaggggatggtgccctagtccaaggcagagaagacctttgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 21637931  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactaga 233  Q
    ||||||||||| |||| |||||||||||||||| ||||||||||| || ||||| |||||||    
T  21637930 ggcactagcggggctcaaacccgggttctctcgaattcaagacctatcattttaccactaga 21637869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 72 - 251
Target Start/End: Complemental strand, 26690287 - 26690108
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| | |||||||||| ||||||||||||||  | |||||| ||||||||||  |||||||||||||||| |||||||    
T  26690287 aaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcgaacacaaagatcacttacaaaggtaattacatttacctccctccaaa 26690188  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtttt 251  Q
     ||||||||||  ||||||||| | |||||||| ||| || ||||||||||||| |||||||||||| ||||||||||||    
T  26690187 agcactagcgggactcgaacccagattctctcgaatttaaaacctgtctttttaccactagaccaagcctttggagtttt 26690108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 72 - 213
Target Start/End: Complemental strand, 33066723 - 33066582
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||    
T  33066723 aaaattttaggatgaggggatggtgccccagtccaaggtagagaagaccttcaggctcaaagagcacttacaaagatatttacatttacctctctccaaa 33066624  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaaga 213  Q
    | |||||| | ||||||||||||| |||||||  ||||||||    
T  33066623 gacactagtgaagctcgaacccggattctctcaaattcaaga 33066582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 72 - 182
Target Start/End: Original strand, 558438 - 558548
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||| ||||||| |||||||||||||  ||||||||||||||||||||  |||||||||||||||| |||||||    
T  558438 aaaattttagggtgaggggatggtgccccattccaaggaagggaagaccttctagctcaaagagcacttacaaaagtaattacatttacctccctccaaa 558537  T
Q  172 ggcactagcgg 182  Q
    |||||||||||    
T  558538 ggcactagcgg 558548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 72 - 238
Target Start/End: Complemental strand, 3201014 - 3200849
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    |||||||||||  |||| ||||||| ||||||| |||| || ||||| |||| |||||||||| ||||||||||  |||||||||||||||| |||||||    
T  3201014 aaaattttagggcgaggagatggtgccccagtctaaggcagagaagatcttcaggctcaaagaacacttacaaaggtaattacatttacctccctccaaa 3200915  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaag 238  Q
    ||||||||||  ||||||| || ||||||||  ||||||||| ||||||||||| ||| ||||||||    
T  3200914 ggcactagcgaggctcgaatccaggttctcttagattcaagatctgtctttttaccac-agaccaag 3200849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 13047148 - 13047303
Alignment:
Q  65 ggtaaggaaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctca 164  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||| |||||||| ||| ||||||||||||||||||   |  |||||| |||||||||     
T  13047148 ggtaaggtaaattttagggtgaggggatggtgctccagtccaaggcagggaagatctttgggctcaaagagcactta---aggtaattatatttacctcc 13047244  T
Q  165 ctccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttta 225  Q
    |||||||| ||   |||| |||||||||||| |||||||| ||||||||||||||||||||    
T  13047245 ctccaaagacat--gcggggctcgaacccggattctctcgaattcaagacctgtcttttta 13047303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 72 - 249
Target Start/End: Complemental strand, 21487282 - 21487106
Alignment:
Q  72 aaaattttaggttgagggg-atggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaa 170  Q
    ||||||||||| ||||||| |||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  21487282 aaaattttaggatgagggggatggtgccccagtctaaggcagggaagactttcgggctcaaagagcacttacaaaaatatttacatttacctccctccaa 21487183  T
Q  171 aggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||  || || ||||||| |||   |||  ||| |||||||||||||||| ||||| |||| ||| ||  ||||||||||    
T  21487182 agataccagtggagctcaaacttaggt--tcttggattcaagacctgtcattttaccacttgactaaacctttggagtt 21487106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 237
Target Start/End: Original strand, 4553569 - 4553723
Alignment:
Q  84 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctc-actccaaaggcactagcgg 182  Q
    ||||||||||||| ||||||| |||  || |||||||| ||| ||||||||| |||||||||| || ||| |||||||||  |||||||  ||||||| |    
T  4553569 tgaggggatggtgccccagtctaagacagagaagacctccggactcaaagagtacttacaaatgtatttatatttacctctcctccaaaaacactagctg 4553668  T
Q  183 agctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaa 237  Q
    | |||||||| |   ||||||| ||||||||| |||||||||| || ||||||||    
T  4553669 aactcgaacctgaaatctctcgaattcaagacatgtctttttaccattagaccaa 4553723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 2098939 - 2099017
Alignment:
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 250  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||| || ||||| || ||||||||| |||||||||||    
T  2098939 ggcactagcggagttcgaacctgggttctctcgaattcaagacctatcattttaccaatagaccaagcctttggagttt 2099017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 2098825 - 2098875
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagacctt 122  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  2098825 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagacctt 2098875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 20961551 - 20961496
Alignment:
Q  135 gcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaa 190  Q
    ||||||||||||  | ||||||||||||| |||||| |||||||||||||||||||    
T  20961551 gcacttacaaatggatttacatttacctccctccaagggcactagcggagctcgaa 20961496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 76 - 251
Target Start/End: Original strand, 20983006 - 20983181
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 175  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |||| ||||||    
T  20983006 ttttagggtgaggggatggtgccccagtccaaggcagggaagactttcgggctcaaagagcacttacaaatgtaattgcatttacctctctccgaaggca 20983105  T
Q  176 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtttt 251  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20983106 ctagcggggctcgaacccggattctcttggattcaagacctgtctttttatcactagaccaagcctttggagtttt 20983181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 17064456 - 17064278
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||  || ||||||||||||| |||||||    
T  17064456 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggcttaaagagcacttacaaaggtatttacatttacctccctccaaa 17064357  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 250  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||    
T  17064356 ggcactagcgaggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagttt 17064278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 37976683 - 37976530
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattac----atttacctcactc 167  Q
    ||||||||||| ||||||||||||| |||||| ||||| ||| || ||||||||||||||| ||||||||||||  || ||||    ||||||||| ||     
T  37976683 aaaattttagggtgaggggatggtgccccagttcaaggcaggaaaaaccttcgggctcaaatagcacttacaaaggtatttacattaatttacctccctt 37976584  T
Q  168 caaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 221  Q
    |||| |||||||||| |||||||||| |||||||||||||||||||||||||||    
T  37976583 caaatgcactagcggggctcgaacccaggttctctcggattcaagacctgtctt 37976530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 72 - 239
Target Start/End: Complemental strand, 41910957 - 41910792
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||| | ||||||||||||| |||||| ||||| || |||||| |||||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  41910957 aaaattttaaggtgaggggatggtgccccagttcaaggcagagaagacattcgggctcaaagaacacttacaaagttaattacatttacctc-ctccaaa 41910859  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagt 239  Q
    |  |||| |  | ||| |||||   ||||||| ||||||||||||||||||||| ||||||| |||||    
T  41910858 gatactaac-aaactcaaacccaaattctctcagattcaagacctgtctttttaccactagagcaagt 41910792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 31640380 - 31640331
Alignment:
Q  7 gaaaagagttagcgaccaagaaattggccaagctattttcttcaaaggta 56  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  31640380 gaaaagagttagtgaccaagaaattggcgaagctattttcttcaaaggta 31640331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 35237103 - 35237199
Alignment:
Q  153 acatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||||||| || ||||| ||||||||| ||||||| || | |||||||| ||||||||| | || ||||| |||||||||||| |||| |||||    
T  35237103 acatttacctcccttcaaagacactagcggggctcgaatccagattctctcgaattcaagacgtatcattttaccactagaccaagcctttagagtt 35237199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 31638193 - 31638152
Alignment:
Q  275 tagtaggtaagctcatataaacataaaataagtcaattccct 316  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  31638193 tagtaggtaagctcacataaacataaaataagtcaattccct 31638152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 5009416 - 5009531
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| || ||||||| ||  ||||| ||||| | |||||||||||||  ||||||| || ||||||| ||| ||||||||| ||| |||||||    
T  5009416 aaaattttagggtg-ggggatgatgcaccagttcaaggcatggaagaccttcggattcaaagaacatttacaaaaatatttacatttatctctctccaaa 5009514  T
Q  172 ggcactagcggagctcg 188  Q
    | ||||| ||| |||||    
T  5009515 gacactaacggggctcg 5009531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 31673956 - 31673894
Alignment:
Q  78 ttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcactt 140  Q
    ||||| ||||||| ||||| |||||||||||| ||||| |||||| |||||||||| ||||||    
T  31673956 ttagggtgaggggttggtgccccagtccaaggcagggaggaccttagggctcaaagggcactt 31673894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 76 - 249
Target Start/End: Original strand, 30054445 - 30054618
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 175  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||  |||||||||||||||| |||||||||||    
T  30054445 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 30054544  T
Q  176 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||||| ||||||||||    
T  30054545 ctagcggggctcgaacccgggttctctcggattcaagacttgactttttaccactagaccaagcctttggagtt 30054618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 20014591 - 20014413
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| | |||||||||| ||||||||||||| ||||||||||||| |||||||| |||||||||||||||| |||||||    
T  20014591 aaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcaggctcaaagagcatttacaaatgtaattacatttacctccctccaaa 20014492  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 250  Q
    || ||||||||  ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||    
T  20014491 ggtactagcgggactcgaacccgggttctctcggattcaagatctgtctttttaccactagaccaagactttggagttt 20014413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 72 - 249
Target Start/End: Complemental strand, 45324139 - 45323962
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||  || ||||||||||||| |||||||    
T  45324139 aaaattttagggtgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaggagcacttacaaaggtatttacatttacctccctccaaa 45324040  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
     |||||||||| ||| |||||| ||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  45324039 agcactagcggggctggaacccaggttctctcggattcaagacctgtcgttttaccactagaccaagcctttggagtt 45323962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 74 - 249
Target Start/End: Original strand, 30370061 - 30370236
Alignment:
Q  74 aattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaagg 173  Q
    ||||||| | ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||     
T  30370061 aattttaaggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaga 30370160  T
Q  174 cactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    |||||| || |||||||||||| |||||||| |||||| || |||||||||| |||||||||||| ||||||||||    
T  30370161 cactagtggggctcgaacccggattctctcgaattcaaaacttgtctttttaccactagaccaagcctttggagtt 30370236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 12025314 - 12025136
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||| ||||| |||||||||||| |||||||||||||||||||||| || |||||||||  |||||||||||||||  |||||||    
T  12025314 aaaattttagggtgagggggtggtgccccagtccaaggcagggaagaccttcgggctcaaatagtacttacaaaggtaattacatttaccttcctccaaa 12025215  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 250  Q
    |||||||  || |||||||||| |||||||||| |||||||| |||| |||||| ||||||||||||||||||||||||    
T  12025214 ggcactaatggggctcgaacccaggttctctcgaattcaagatctgtatttttaccactagaccaagtctttggagttt 12025136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 84 - 246
Target Start/End: Complemental strand, 21090236 - 21090074
Alignment:
Q  84 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcgga 183  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||||| |||||||||||     
T  21090236 tgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaatgtatttacatttacctccctccaacggcactagcggg 21090137  T
Q  184 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttgga 246  Q
    |||||||||||  |||||||| |||||||||||||| ||||| |||||||||||| |||||||    
T  21090136 gctcgaacccgaattctctcgaattcaagacctgtcattttaccactagaccaagcctttgga 21090074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 72 - 225
Target Start/End: Complemental strand, 4573512 - 4573359
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||| ||| | ||||||||   |||||||||||||| ||||||||||||||||||||  || ||||||||||||| |||||||    
T  4573512 aaaattttagggtgaggggatagtgcctcagtccaaaacagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaa 4573413  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttta 225  Q
    | || ||| || ||||||||||||||||||||||||||||||||||||||||||    
T  4573412 gacattagtggggctcgaacccgggttctctcggattcaagacctgtcttttta 4573359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 73 - 250
Target Start/End: Original strand, 33763254 - 33763431
Alignment:
Q  73 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 172  Q
    |||||||||| |||||||||| || |||||| ||||| |||||| || |||||||||||| | ||||||||||  ||||||||||| |||| ||| ||||    
T  33763254 aaattttagggtgaggggatgatgccccagttcaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctccctctaaag 33763353  T
Q  173 gcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 250  Q
    |||||||||| |||||||||  | |||||||| ||||||||||||||||||||  ||||||||||  |||| ||||||    
T  33763354 gcactagcggggctcgaacctagattctctcgaattcaagacctgtctttttactactagaccaaacctttagagttt 33763431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 30850841 - 30850985
Alignment:
Q  74 aattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaagg 173  Q
    ||||||||| ||||||||||||| |||||||||||  ||| |||||||||||| ||||||||||||||||||   ||||| ||||||||| ||||||||     
T  30850841 aattttagggtgaggggatggtgccccagtccaagacaggaaagaccttcgggttcaaagagcacttacaaaggcaattatatttacctccctccaaaga 30850940  T
Q  174 cactagcggagctcgaacccgggttctctcggattcaagacctgt 218  Q
    ||||| ||| ||||||||||| ||||||||||||| |||| ||||    
T  30850941 cactaacggggctcgaacccgagttctctcggatttaagatctgt 30850985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 22024235 - 22024128
Alignment:
Q  73 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 172  Q
    |||||||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||||||||  |||||||    
T  22024235 aaattttagggtgaggggatggtgccccagtccaaggcagagaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccatccaaag 22024136  T
Q  173 gcactagc 180  Q
    ||||||||    
T  22024135 gcactagc 22024128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 14498078 - 14498182
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||| | |||||||||||| |||||||||||| || |||||||||||||||||||  |||||||||||||||| |||||||    
T  14498078 aaaattttagggtgaggggatggcgccccagtccaaggcagggaagacctttggtctcaaagagcacttacaaaggtaattacatttacctccctccaaa 14498177  T
Q  172 ggcac 176  Q
    |||||    
T  14498178 ggcac 14498182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 76 - 237
Target Start/End: Complemental strand, 35618104 - 35617948
Alignment:
Q  76 ttttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggca 175  Q
    ||||||| ||||||||||||  |||||||||| | | ||||||||||||||||||||||||||||||||    |  ||||||||| || ||  |||||||    
T  35618104 ttttagggtgaggggatggtaccccagtccaaagcaaggaagaccttcgggctcaaagagcacttacaa----agctacatttacatccct-gaaaggca 35618010  T
Q  176 ctagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaa 237  Q
    ||| ||||||||||| |  |||||||| |||||||||||||||| ||||| |||||||||||    
T  35618009 ctaacggagctcgaatctaggttctcttggattcaagacctgtcattttaccactagaccaa 35617948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 15034501 - 15034411
Alignment:
Q  159 acctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    ||||| |||||||||||||||  | ||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  15034501 acctccctccaaaggcactagtagggctcgaacctgggttctttcggattcaagacctgtctttttaccactagaccaagcctttggagtt 15034411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 35371756 - 35371833
Alignment:
Q  84 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacc 161  Q
    ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  35371756 tgaggggatggtgccccagtccaaggcagggaagaacttcgggctcaaagagcacttacaaaggtaattacatttacc 35371833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 44438562 - 44438670
Alignment:
Q  85 gaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggag 184  Q
    |||||||||||  |||||| ||||| ||||||||||||||   | ||||| ||||||||||  |||||||||||||||| ||||||||||| ||||||||    
T  44438562 gaggggatggtaccccagttcaaggcagggaagaccttcgaatttaaagaacacttacaaaagtaattacatttacctccctccaaaggcattagcggag 44438661  T
Q  185 ctcgaaccc 193  Q
    |||||||||    
T  44438662 ctcgaaccc 44438670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 33762539 - 33762646
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| |||||||||| || |||||||||||| |||||| || |||||||||||| | ||||||||||  ||||||||||| |||| ||| |||    
T  33762539 aaaattttagggtgaggggatgatgccccagtccaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctccctctaaa 33762638  T
Q  172 ggcactag 179  Q
    ||||||||    
T  33762639 ggcactag 33762646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 17015252 - 17015192
Alignment:
Q  73 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaag 133  Q
    |||||||||| ||||||||||||| |||||||||| | |||||||||||||||||||||||    
T  17015252 aaattttaggatgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaag 17015192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 35163749 - 35163926
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  35163749 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 35163848  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
    |||| ||| || |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  35163849 ggcattagtggggctcgaaccctggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaagtt 35163926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 19686827 - 19686991
Alignment:
Q  73 aaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 172  Q
    |||||||||| |||||||||| || ||||||| |||| ||| |||| ||||||||||||||||||||||||||  |||||||||||||||| || |||||    
T  19686827 aaattttagggtgaggggatgatgccccagtctaagggaggaaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctacaaag 19686926  T
Q  173 gcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaa 237  Q
    ||||||| || |||||||||| ||||||||| |||||||||||||| |||||| |||||||||||    
T  19686927 gcactagaggggctcgaacccaggttctctcagattcaagacctgtttttttaccactagaccaa 19686991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 2711739 - 2711910
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| |||||||||||||      ||||||| |||||||||||||| ||||||||||||||||||||  || ||||||||||||| |||||||    
T  2711739 aaaattttagggtgaggggatggtg------tccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaa 2711832  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
     ||||||| || ||||||| || |||||| |||||||||||||||||| ||||| |||||||||||| |||| |||||    
T  2711833 agcactagtggggctcgaatccaggttctatcggattcaagacctgtcattttaccactagaccaagcctttcgagtt 2711910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 20685458 - 20685348
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  20685458 aaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 20685359  T
Q  172 ggcactagcgg 182  Q
    |||||||||||    
T  20685358 ggcactagcgg 20685348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 17948813 - 17948703
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    ||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  17948813 aaaattttaaggtgaggggatggtgtcccagtccaagacagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctctctccaaa 17948714  T
Q  172 ggcactagcgg 182  Q
    | |||||||||    
T  17948713 gacactagcgg 17948703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 151 - 246
Target Start/End: Complemental strand, 14496406 - 14496311
Alignment:
Q  151 ttacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttgga 246  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| |||||||||||  |||||||    
T  14496406 ttacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctttctttttaccactagaccaaacctttgga 14496311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 14505524 - 14505698
Alignment:
Q  72 aaaattttaggttgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaa 171  Q
    |||||||||||| |||||||||||| |||||||||||| | |||||| ||||| || ||||||  | |||||||  || ||||||||||||| |||||||    
T  14505524 aaaattttaggt-gaggggatggtgccccagtccaaggcacggaagatcttcgcgcccaaagaatatttacaaaggta-ttacatttacctccctccaaa 14505621  T
Q  172 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 249  Q
     |||||||||| |||||||  |||| |||||||||||||| || ||| |||||| | |||||||||| ||||||||||    
T  14505622 agcactagcggggctcgaattcgggatctctcggattcaa-acttgtttttttacctctagaccaagcctttggagtt 14505698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 15070246 - 15070152
Alignment:
Q  84 tgaggggatggtggcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcacta 178  Q
    ||||||||||||| ||||||| |||| ||||||||||||||||||||| || ||||||||||| |||||| ||||||||| ||||||||||||||    
T  15070246 tgaggggatggtgccccagtctaaggcagggaagaccttcgggctcaatgaacacttacaaatgtaattatatttacctccctccaaaggcacta 15070152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 24336718 - 24336633
Alignment:
Q  102 gtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctc 187  Q
    |||||||| |||||||| |||| |||||||| | ||||||||||  || ||||||||||||| ||||||||| |||||| ||||||    
T  24336718 gtccaaggcagggaagatcttcaggctcaaaaaacacttacaaaagtatttacatttacctccctccaaagggactagcagagctc 24336633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 97 - 250
Target Start/End: Original strand, 6993 - 7142
Alignment:
Q  97 gcccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccggg 196  Q
    ||||||||||||||||||||||||||||| |||||||| ||||| ||||  ||||||||||||| || ||||||| ||||||||||  |||||||||||     
T  6993 gcccagtccaaggtagggaagaccttcggactcaaagaacacttgcaaaggtaattacatttacttccctccaaacgcactagcgggactcgaacccgga 7092  T
Q  197 ttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 250  Q
    |||||||   ||| || |||||||||||| ||||| | |||| |||||||||||    
T  7093 ttctctc---ttcgagtcctgtctttttaccacta-aacaagcctttggagttt 7142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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