View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4765_low_5 (Length: 328)
Name: NF4765_low_5
Description: NF4765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4765_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 42934786 - 42935038
Alignment:
| Q |
1 |
gaaggggtcttgtgaataagataggcaaggcagtaataaaagaataggcagaggactgcattgattggaaaggtgtagcagcaatttgtttattctttca |
100 |
Q |
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| T |
42934786 |
gaaggggtcttgtgaataagataggcaaggcagtaataaaagaataggcagaggactgcattgattggaaaggtgtagcagc--tttgtttattctttca |
42934883 |
T |
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| Q |
101 |
aattagcttaagattgcagaatttttcttgctggtttttctagttgttaattagacttagattggcactagatgtgtccaaactttagactagtattttt |
200 |
Q |
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| T |
42934884 |
aattagcttaagattgcagaatttt-------------tctagttgttaattagacttagattggcactagatgtgtccaaactttagactagtattttt |
42934970 |
T |
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| Q |
201 |
cttttgtaagacatagatttcagaatttttcttgctctttcctattgcatctacgttattgattggag |
268 |
Q |
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| T |
42934971 |
cttttgtaagacatagatttcagaatttttcttgctctttcctattgcatctacgttattgattggag |
42935038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 42935061 - 42935093
Alignment:
| Q |
285 |
cggcttcaacaacgtttatttccgatttttcat |
317 |
Q |
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| T |
42935061 |
cggcttcaacaacgtttatttccgatttttcat |
42935093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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