View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4765_low_6 (Length: 256)
Name: NF4765_low_6
Description: NF4765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4765_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 51998121 - 51998352
Alignment:
| Q |
11 |
atcatcaagatataactccttcaaaagtgatcctaatgaatcagccaaaatatcgagactagcaaaagtgagaagggaacattggcttagatttatggat |
110 |
Q |
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| T |
51998121 |
atcatcaagatataactccttcaaaagtgatcctaatgaatcagccaaaatatcgagactagcaaaagtgagaagggaacattggcttagatttatggat |
51998220 |
T |
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| Q |
111 |
ctaagtgttgttgcagaagaaactagtaactgcaaccctttatcagaaagacgacatgcaccggtgagagatagactaatcaatctagacaagcagtttg |
210 |
Q |
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| T |
51998221 |
ctaagtgttgttgcagaagaaactagtaactgcaaccctttatcagaaagacgacatgcaccggtgagagatagactaatcaatctagacaagcagtttg |
51998320 |
T |
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| Q |
211 |
gtgactttgccaatgtacaaggtaatgtatat |
242 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
51998321 |
gtgactttgccaatgtacaaggtaatgtatat |
51998352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 52010685 - 52010916
Alignment:
| Q |
11 |
atcatcaagatataactccttcaaaagtgatcctaatgaatcagccaaaatatcgagactagcaaaagtgagaagggaacattggcttagatttatggat |
110 |
Q |
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|||||||||||| ||||| ||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
52010685 |
atcatcaagatacaactctttcaaaatcgatcctaatgaatcagccaaaatattaagactagcatatgtgagaagggaacattggcttagatttatggat |
52010784 |
T |
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| Q |
111 |
ctaagtgttgttgcagaagaaactagtaactgcaaccctttatcagaaagacgacatgcaccggtgagagatagactaatcaatctagacaagcagtttg |
210 |
Q |
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| T |
52010785 |
ctaattgttgttgcagaagaaaccattagctgcaaccccttatcagtaagacggcatgcaccagtgagggatagactaatcaatctagacaagcagcttg |
52010884 |
T |
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| Q |
211 |
gtgactttgccaatgtacaaggtaatgtatat |
242 |
Q |
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| T |
52010885 |
gtgactttgccaatgtagaaagtaatgtatat |
52010916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 18271665 - 18271577
Alignment:
| Q |
45 |
aatgaatcagccaaaatatcgagactagcaaaagtgagaagggaacattggcttagatttatggatctaagtgttgttgcagaagaaac |
133 |
Q |
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||||| ||||||||||||| ||||| ||| | |||||||| || || ||||| || ||||| ||||||||||||| | ||||||||| |
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| T |
18271665 |
aatgattcagccaaaatatgaagactggcagatgtgagaagcgagcactggctaaggtttattgatctaagtgttggagtagaagaaac |
18271577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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