View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4765_low_7 (Length: 248)
Name: NF4765_low_7
Description: NF4765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4765_low_7 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 18344582 - 18344396
Alignment:
| Q |
20 |
ttaattactaaagaatcaataacctactcatcgcttaccattatctggatataaagaaccgcggaaaatagaaaattaaaataaagatctatgtggtgat |
119 |
Q |
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| T |
18344582 |
ttaattactaaagaattaataacctactcatcgcttaccattatctggatataaagaaccgcggaaaatagaaaatcaaaataaagatctatgtggtgat |
18344483 |
T |
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| Q |
120 |
ataattatagcaactgaaataaaaaagaatctgattattagttgtaaagcaataagaatatacggataaatgaaggggtgaaagaaa |
206 |
Q |
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| T |
18344482 |
ataattatagcaactgaaataaaaaagaatctgattattagttgtaaagcaataagaatatacagataaatgaaggggtgaaagaaa |
18344396 |
T |
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Target: scaffold0002 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 162751 - 162937
Alignment:
| Q |
20 |
ttaattactaaagaatcaataacctactcatcgcttaccattatctggatataaagaaccgcggaaaatagaaaattaaaataaagatctatgtggtgat |
119 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
162751 |
ttaattactaaagaattaataacctactcatcgcttaccattatctggatatatagaaccgcggaaaatataaaatcaaaataaagatctatgtggtgat |
162850 |
T |
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| Q |
120 |
ataattatagcaactgaaataaaaaagaatctgattattagttgtaaagcaataagaatatacggataaatgaaggggtgaaagaaa |
206 |
Q |
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| T |
162851 |
ataattttagcaactgaaataaaaaagaatctgattattagttgtaaagcaataagaatatccagataaatgaagtggtgaaagaaa |
162937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 17971284 - 17971338
Alignment:
| Q |
20 |
ttaattactaaagaatcaataacctactcatcgcttaccattatctggatataaa |
74 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
17971284 |
ttaattactaaagaattaataatctactcatcgcttaccattatctggatataaa |
17971338 |
T |
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