View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4766-Insertion-1 (Length: 999)

Name: NF4766-Insertion-1
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4766-Insertion-1
NF4766-Insertion-1
[»] chr4 (5 HSPs)
chr4 (50-625)||(56294635-56295214)
chr4 (686-981)||(56294270-56294576)
chr4 (8-58)||(56295226-56295275)
chr4 (8-58)||(55000632-55000681)
chr4 (8-58)||(11380271-11380319)
[»] scaffold0085 (1 HSPs)
scaffold0085 (8-58)||(14950-14999)
[»] chr8 (1 HSPs)
chr8 (8-58)||(36228497-36228546)
[»] chr3 (5 HSPs)
chr3 (8-58)||(45081479-45081528)
chr3 (13-58)||(48058267-48058310)
chr3 (8-58)||(37727621-37727669)
chr3 (8-58)||(45059775-45059825)
chr3 (8-58)||(46915786-46915835)
[»] chr7 (2 HSPs)
chr7 (8-58)||(41115498-41115547)
chr7 (9-58)||(44545272-44545320)
[»] chr6 (3 HSPs)
chr6 (8-58)||(22046418-22046467)
chr6 (8-58)||(22058826-22058875)
chr6 (8-58)||(22047215-22047264)
[»] chr5 (2 HSPs)
chr5 (13-58)||(33574039-33574082)
chr5 (29-58)||(10470873-10470902)
[»] chr2 (4 HSPs)
chr2 (8-58)||(3322902-3322951)
chr2 (8-58)||(44356805-44356854)
chr2 (8-58)||(13913468-13913517)
chr2 (8-58)||(44357602-44357651)
[»] chr1 (3 HSPs)
chr1 (13-58)||(2071485-2071528)
chr1 (13-58)||(19790832-19790875)
chr1 (13-58)||(50546071-50546114)


Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 50 - 625
Target Start/End: Complemental strand, 56295214 - 56294635
Alignment:
Q  50 tatatatatttgtattagtggatactcaatatcataaatgaaaacagacattatgtttaaatgtaggcaaaactgagttaaagcttaatcaaacatggag 149  Q
    ||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  56295214 tatatatatatatatcagtggatactcaatatcataaatgaaaacagacattatgtttaaatgtaggcaaaaatgagttaa-gcttaatcaaacatggag 56295116  T
Q  150 aagtcactccaatgagatgaactgaataaaaaggtataatttgagcagaacatttttcatataaaatcaaagtagaatcacaatcatagtcataggttaa 249  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56295115 aagtcactccaatgagatgaactaaataaaaaggtataatttgagcagaacatttttcatataaaatcaaagtagaatcacaatcatagtcataggttaa 56295016  T
Q  250 atttggtaaagcatacaagaatttactttcnnnnnnnn------aataaattactagttatatagaatagatttatgattatgtttaattgttagtctta 343  Q
    |||||||||||||||||||||||||||||               ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  56295015 atttggtaaagcatacaagaatttacttttttttttttttttttaataaattaatagttatatagaatagatttatgattatgtttaattgttagtttta 56294916  T
Q  344 ctnnnnnnntaatgtgtacgtaatgtgtgaatttacttactttttgagaattatatttctcttgatttaagtgtcaaaatcttaaacgagttattgtatt 443  Q
    ||       ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  56294915 ctaaaaa--taatgtgtatgtaatgtgtgaatttacttactttttgagaattatatttctcttaatttaagtgtcaaaatcttaaacgagttattgtatt 56294818  T
Q  444 aagggaaggtgcgtggacgtggttgttaagaatggcagtaaaatatttgata-tcctctgtctgaatatataaactttgtcaactcacgaaacgacacaa 542  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  56294817 aagggaaggtgcgtggacgtggttgttaagaatggcagtaaaatatttgacagtcctctgtctgaatatataaactttgtcaactcacgaaacgacacaa 56294718  T
Q  543 cacaagacgatgatcgagtttgttatcttaaagttcccaaacaaaacaagcaagtcaaagttcagaatcagatatcagtgaca 625  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  56294717 cacaagacgatgatcgagtttgttatcttaaagttcccaaacaaaacaagcatgtcaaagttcagaatcagatatcagtgaca 56294635  T

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Target: chr4; HSP #2
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 686 - 981
Target Start/End: Complemental strand, 56294576 - 56294270
Alignment:
Q  686 aagaagctcaagaaaggtctcaattaattgcatataaacttcattttcataatagttggaatgatatcatagagttgtgatgagaaagttaattagaaat 785  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||    
T  56294576 aagaagctcaagaaaggtctcaattaattgcatataaacttcattttcataatattgggaatgatatcatagagttgtgatgagaaaattaattagaaat 56294477  T
Q  786 tgatatgataagataatatattagac-aaaacacgagtatggagaggacttgacattgaacctg-agggtccactatgaaaccg------tggatccatt 877  Q
    |||||||        ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||      ||||||||||    
T  56294476 tgatatg--------atatattagacaaaaacacgagtatggagaggacttgacattgaacctgaagggtccactatgaaaccgttggattggatccatt 56294385  T
Q  878 ccattt------atttaatgggat-agaatccaaatcaa--gaatgaccagtc-agaatttgaccatctgactga-tcctgaccctctgactctgcattt 966  Q
    ||||||      ||||||||||||   ||||||||||||   ||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||    
T  56294384 ccatttcatttaatttaatgggatccaaatccaaatcaaagtaatgaccagtcaagaatttgaccatctgactgattcttgaccctctgactctgcattt 56294285  T
Q  967 attctcacttctaaa 981  Q
    |||||||| ||||||    
T  56294284 attctcacctctaaa 56294270  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 56295275 - 56295226
Alignment:
Q  8 ctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  56295275 ctcatctctcattttaaaa-ggtcctctcacttgatatgccctatatatat 56295226  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 55000632 - 55000681
Alignment:
Q  8 ctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  55000632 ctcatctctcattttaaaa-ggtcctttcacttgatatgccctatatatat 55000681  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 11380319 - 11380271
Alignment:
Q  8 ctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||| |||||  |||||||||||||||||| |||||||||||    
T  11380319 ctcatctctcattataaaa--gtcctctcacttgatatgtcctatatatat 11380271  T

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Target: scaffold0085 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 14950 - 14999
Alignment:
Q  8 ctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  14950 ctcatctctcattttaaaa-ggtgctctcacttgatatgccctatatatat 14999  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 36228546 - 36228497
Alignment:
Q  8 ctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  36228546 ctcatctctcattttaaaa-ggtcctcttacttgatatgccctatatatat 36228497  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 45081528 - 45081479
Alignment:
Q  8 ctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  45081528 ctcatctctcattttaaaa-ggtgctctcacttgatatgccctatatatat 45081479  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 48058310 - 48058267
Alignment:
Q  13 ctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||    
T  48058310 ctctcattttaaaa--gtcctctcacttgatatgccctatatatat 48058267  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 37727669 - 37727621
Alignment:
Q  8 ctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||||| |  ||||||||| ||||||||||||||||||||    
T  37727669 ctcatctctcattttaaga--gtcctctcatttgatatgccctatatatat 37727621  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 45059825 - 45059775
Alignment:
Q  8 ctcatctctcattttaaaaaggtcctctcacttgatatgccct-atatatat 58  Q
    ||||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  45059825 ctcatctctcattttaaaa-ggtcctctcacttgatatgtcctcatatatat 45059775  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 46915835 - 46915786
Alignment:
Q  8 ctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||||| ||  ||||||||||||||||||| |||||||||    
T  46915835 ctcatctctcattttaacaac-tcctctcacttgatatgccatatatatat 46915786  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 41115498 - 41115547
Alignment:
Q  8 ctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  41115498 ctcatctctcattttaacaac-tcctctcacttgatatgccctatatatat 41115547  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 44545272 - 44545320
Alignment:
Q  9 tcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    |||||||||||||||| ||  || ||||||||||||||||||||||||||    
T  44545272 tcatctctcattttaacaac-tcatctcacttgatatgccctatatatat 44545320  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 22046467 - 22046418
Alignment:
Q  8 ctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  22046467 ctcatctctcattttaacaac-tcctctcacttgatatgccctatatatat 22046418  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 22058875 - 22058826
Alignment:
Q  8 ctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  22058875 ctcatctctcattttaacaac-tcctctcacttgatatgccctatatatat 22058826  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 22047215 - 22047264
Alignment:
Q  8 ctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||||| ||  ||||||||||||||||| |||||||||||    
T  22047215 ctcatctctcattttaacaat-tcctctcacttgatatgtcctatatatat 22047264  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 33574039 - 33574082
Alignment:
Q  13 ctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||    
T  33574039 ctctcattttaaaa--gtcctctcacttgatatgccctatatatat 33574082  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 10470873 - 10470902
Alignment:
Q  29 gtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||||||||||||||||||    
T  10470873 gtcctctcacttgatatgccctatatatat 10470902  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 3322951 - 3322902
Alignment:
Q  8 ctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||||||| | ||||||||||||||||||| |||||||||    
T  3322951 ctcatctctcattttaaaatg-tcctctcacttgatatgccatatatatat 3322902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 44356854 - 44356805
Alignment:
Q  8 ctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  44356854 ctcatctctcattttaacaac-tcctctcacttgatatgccctatatatat 44356805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 13913468 - 13913517
Alignment:
Q  8 ctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||| ||| | | |||||||||||||||||||||||||||||    
T  13913468 ctcatctctcattataagatg-tcctctcacttgatatgccctatatatat 13913517  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 44357602 - 44357651
Alignment:
Q  8 ctcatctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||||| ||  ||||||||||||||||| |||||||||||    
T  44357602 ctcatctctcattttaacaat-tcctctcacttgatatgtcctatatatat 44357651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 2071485 - 2071528
Alignment:
Q  13 ctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||    
T  2071485 ctctcattttaaaa--gtcctctcacttgatatgccctatatatat 2071528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 19790875 - 19790832
Alignment:
Q  13 ctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||   |||||||||||||||||||||||||||||    
T  19790875 ctctcattttaaaac--tcctctcacttgatatgccctatatatat 19790832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 50546071 - 50546114
Alignment:
Q  13 ctctcattttaaaaaggtcctctcacttgatatgccctatatatat 58  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||||    
T  50546071 ctctcattttaaaa--gtcctcttacttgatatgccctatatatat 50546114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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