View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4766-Insertion-10 (Length: 468)

Name: NF4766-Insertion-10
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4766-Insertion-10
NF4766-Insertion-10
[»] chr5 (4 HSPs)
chr5 (15-468)||(43227123-43227576)
chr5 (29-468)||(43236633-43237082)
chr5 (113-326)||(43244951-43245165)
chr5 (364-412)||(43244853-43244901)


Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 15 - 468
Target Start/End: Complemental strand, 43227576 - 43227123
Alignment:
Q  15 catgtataacatcccattaacaacttattataaacatgtttatttctcccttgaattaaatctgcattttgtgnnnnnnnggttcatgtatttcgctata 114  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  43227576 catgtataacatcccattaacaacatattagaaacatgtttatttctcccttgaattaaatctgcattttgtgtttttttggttcatgtatttcgctata 43227477  T
Q  115 attttactactttctttgatttcaggttgtgactatctatcaatggtcatgagtcgaatgtacaagttaagcattttccttttctttgttaagttggctt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  43227476 attttactactttctttgatttcaggttgtgactatctatcaatggtcatgagtcgaatgtataagttaagcattttccttttctttgtcaagttggctt 43227377  T
Q  215 ttacttatgttccaatgtactttggtgtctctcatgaagatagaaggaaatttgagtggatcagttgttttttctccattatgtcatttgtttgtctctc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43227376 ttacttatgttccaatgtactttggtgtctctcatgaagatagaaggaaatttgagtggatcagttgttttttctccattatgtcgtttgtttgtctctc 43227277  T
Q  315 catcgaccatcgtcgcgaacaacgtgaggaagaacgtctcgaacaacctgttccttttaaaattattattaaggacaaaggggtttagagttattgtttg 414  Q
    ||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43227276 cattgaccatcgtcgcgaacaacgcgaagaagaacgtctcgaacaacctgttccttttaaaattattattaaggacaaaggggtttagacttattgtttg 43227177  T
Q  415 acattcaccnnnnnnnnntgaatattttgttaaggtttgctttgatgtgattgt 468  Q
    |||||||||         ||||||||||||||||||||||||||||||||||||    
T  43227176 acattcaccaataaaaaatgaatattttgttaaggtttgctttgatgtgattgt 43227123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 29 - 468
Target Start/End: Complemental strand, 43237082 - 43236633
Alignment:
Q  29 cattaacaacttattataaacatgtttatttctcccttgaattaaatctgcattttgtgnnnnnnn---------ggttcatgtatttcgctataatttt 119  Q
    |||||||| | ||||||||||||||||| || |||||||||||||||||||||||||||                |||| |||||||| ||| ||||||     
T  43237082 cattaacaccatattataaacatgtttaattttcccttgaattaaatctgcattttgtgtttttttttgttttttggtttatgtatttggctctaatttg 43236983  T
Q  120 actactttctttgatttcaggttgtgactatctatcaatggtcatga---gtcgaatgtacaagttaagcattttccttttctttgttaagttggctttt 216  Q
    ||||||||| |||| || |||| |||||||||||||||||| | ||    ||| | ||| |||||||||||||||  ||||  |  |||| |||||||||    
T  43236982 actactttccttgaatttaggtcgtgactatctatcaatggccttgttgggtccactgttcaagttaagcattttattttttgtcattaatttggctttt 43236883  T
Q  217 acttatgttccaatgtactttggtgtctctcatgaagatagaaggaaatttgagtggatcagttgttttttctccattatgtcatttgtttgtctctcca 316  Q
    |||||||| |||| |||||  |||||| || | ||||||||||||| ||||||||||   |||||||||||||||||||| |||||||||||| | |  |    
T  43236882 acttatgtcccaaagtactacggtgtcccttacgaagatagaaggatatttgagtgggcaagttgttttttctccattatatcatttgtttgtatatgga 43236783  T
Q  317 tcgaccatcgtcgcgaacaacgtgaggaagaacgtctcgaacaacctgttccttttaaaattattattaaggacaaaggggtttagagttattgtttgac 416  Q
    ||||  |||| |||||| |||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| ||| |    
T  43236782 tcgattatcgccgcgaagaacgcgaagaagaacgtcttgaacaacccgttccttttaaaattattattaaggacaaaagggtttagacttattg-ttgtc 43236684  T
Q  417 attcaccnnnnnnnnntgaatattttgttaaggtttgctttgatgtgattgt 468  Q
    ||||| |          ||||||||||||||||||||||||||||| |||||    
T  43236683 attca-caagaaaaaaagaatattttgttaaggtttgctttgatgtaattgt 43236633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 113 - 326
Target Start/End: Complemental strand, 43245165 - 43244951
Alignment:
Q  113 taattttactactttctttgatttcaggttgtgactatctatcaatggtcatgagtcgaatgtacaagttaagcattttccttttctttgttaagttggc 212  Q
    |||||||||||||||  |||| || |||| ||||||||||||||||||   || |||||||   | ||||||||||||| |||||  |  ||||||||||    
T  43245165 taattttactactttacttgaatttaggtagtgactatctatcaatggctctgggtcgaatactccagttaagcattttgctttttgtcattaagttggc 43245066  T
Q  213 ttttacttatgttccaatgtactttggtgtctctcatgaagatagaaggaaatttgagtggatcagt-tgttttttctccattatgtcatttgtttgtct 311  Q
    |||||||||| ||||||||||||  |||||  |||| |||||| |||||||||||||||  || ||| | ||||||||||||||||||   |||||||||    
T  43245065 ttttacttatattccaatgtactacggtgttcctcaagaagatcgaaggaaatttgagttcattagtcttttttttctccattatgtcgggtgtttgtct 43244966  T
Q  312 ctccatcgaccatcg 326  Q
     |  |||||||||||    
T  43244965 atggatcgaccatcg 43244951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 43244901 - 43244853
Alignment:
Q  364 gttccttttaaaattattattaaggacaaaggggtttagagttattgtt 412  Q
    |||||||||||||||||||||||||||||| || |||||| ||||||||    
T  43244901 gttccttttaaaattattattaaggacaaaaggttttagatttattgtt 43244853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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