View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4766-Insertion-11 (Length: 399)
Name: NF4766-Insertion-11
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4766-Insertion-11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 42390919 - 42390667
Alignment:
| Q |
8 |
gcatgaccttcctccgcctctgtaaccaccatgccttcatctcatccttcctccgatctaattctccaccatctctcttcctccgattacgaaatcaagc |
107 |
Q |
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| T |
42390919 |
gcatgaccttcctccgccgctgtaaccaccatgccttcatctcatccttcctccgatctaatcctccaccgtctatcttcctccgattacgaaatcaagc |
42390820 |
T |
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| Q |
108 |
ttaaagctatccgcgaaattaagaatcaaattatcagtaaccgtaccaagaaactctcgtacatcaaactcgacaccgttcc------cgccgatgctct |
201 |
Q |
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| T |
42390819 |
tcaaagctatccgcgaaattaagaatcaaatcatcggtaaccgcaccaagaaactctcttacatcaaactcggcgccgttccctccgtcgccgatgctct |
42390720 |
T |
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| Q |
202 |
cgctactgcaaactccgattccgatttcggttctagtcttatcgttcagtccg |
254 |
Q |
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| T |
42390719 |
cgcaactgcaaattccgattccgatttcggttccaaccttatcgttcagtccg |
42390667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 270 - 399
Target Start/End: Complemental strand, 43235636 - 43235507
Alignment:
| Q |
270 |
agcggaaatggtggcggtggagagatgaggttgttgttgcagcaggaggtggtggaagggggaagaacaaagtgtttgagctgtgttgaatagaatgagg |
369 |
Q |
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| T |
43235636 |
agcggaaatggtggcggtggagagatgaggttgttgttgcagcaggaggtggtggaagggggaagaacaaagtgtttgagttgtgctgaatagaatgagg |
43235537 |
T |
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| Q |
370 |
agaacattttaatcctagcccttagtttta |
399 |
Q |
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| T |
43235536 |
agaacattttaatcctaacccttagtttta |
43235507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 282 - 399
Target Start/End: Original strand, 43235859 - 43235973
Alignment:
| Q |
282 |
ggcggtggagagatgaggttgttgttgcagcaggaggtggtggaagggggaagaacaaagtgtttgagctgtgttgaatagaatgaggagaacattttaa |
381 |
Q |
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| T |
43235859 |
ggcggtggagagatgaggttgttgttgcagcaggaggtaa---atgcgggaagaactaagtgtttgagttgtgtggaatagaatgaggagaacattttaa |
43235955 |
T |
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| Q |
382 |
tcctagcccttagtttta |
399 |
Q |
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| T |
43235956 |
tcctagcccttggtttta |
43235973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 338
Target Start/End: Original strand, 28548223 - 28548275
Alignment:
| Q |
286 |
gtggagagatgaggttgttgttgcagcaggaggtggtggaagggggaagaaca |
338 |
Q |
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| T |
28548223 |
gtggagagatgaggttgttattgcagcaggaggtggtgaaagggggaagaaca |
28548275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 28547904 - 28547841
Alignment:
| Q |
272 |
cggaaatggtggcggtggagagatgaggttgttgttgcagcaggaggtggtggaagggggaagaaca |
338 |
Q |
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| T |
28547904 |
cggaagtggcggcggtggagagatgagattgtcgttgcagcaaga---ggtggaagggggaagaaca |
28547841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 46295517 - 46295570
Alignment:
| Q |
282 |
ggcggtggagagatgaggttgttgttgcagcaggaggtggtggaagggggaagaaca |
338 |
Q |
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| T |
46295517 |
ggcggtggagagatgaggttggtgttgcggcagga---ggtggaagggggaagaaca |
46295570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 355
Target Start/End: Complemental strand, 3466815 - 3466735
Alignment:
| Q |
272 |
cggaaatggtggcggtggagagatgaggttgttgttgcagcaggaggtggtggaagggggaagaacaaagtgtttgagctgtgt |
355 |
Q |
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| T |
3466815 |
cggaagtggcggcggtggagagatgatgttgttgttgcggtagga---ggtggaagggggaagaacagagtaattgagttgtgt |
3466735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 9482856 - 9482803
Alignment:
| Q |
282 |
ggcggtggagagatgaggttgttgttgcagcaggaggtggtggaagggggaagaaca |
338 |
Q |
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| T |
9482856 |
ggcggtggagagatgaggttggtgttgtggcaggag---gtggaagggggaagaaca |
9482803 |
T |
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