View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4766-Insertion-14 (Length: 292)

Name: NF4766-Insertion-14
Description: NF4766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4766-Insertion-14
NF4766-Insertion-14
[»] chr3 (22 HSPs)
chr3 (8-289)||(10516949-10517230)
chr3 (8-292)||(11782306-11782590)
chr3 (19-276)||(10526833-10527093)
chr3 (8-289)||(10500038-10500322)
chr3 (124-276)||(10541448-10541600)
chr3 (124-231)||(8860805-8860912)
chr3 (124-248)||(10580103-10580227)
chr3 (124-247)||(11149297-11149420)
chr3 (124-248)||(10376288-10376412)
chr3 (124-250)||(10088290-10088416)
chr3 (133-250)||(10195173-10195290)
chr3 (138-250)||(10434501-10434613)
chr3 (124-231)||(10888825-10888932)
chr3 (124-247)||(11131469-11131592)
chr3 (124-247)||(10364241-10364364)
chr3 (124-227)||(11160460-11160563)
chr3 (127-230)||(11768754-11768857)
chr3 (124-180)||(10085678-10085734)
chr3 (124-180)||(10192598-10192654)
chr3 (124-259)||(13332395-13332530)
chr3 (124-180)||(9838431-9838487)
chr3 (124-180)||(9849309-9849365)
[»] chr4 (1 HSPs)
chr4 (3-278)||(17853242-17853517)
[»] chr2 (1 HSPs)
chr2 (138-248)||(26906399-26906509)
[»] chr6 (1 HSPs)
chr6 (124-232)||(31680182-31680290)
[»] scaffold0083 (1 HSPs)
scaffold0083 (124-250)||(50248-50374)
[»] chr8 (2 HSPs)
chr8 (124-178)||(11484589-11484643)
chr8 (124-181)||(44958152-44958209)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 10517230 - 10516949
Alignment:
Q  8 ttttacacatcttctccatcttggaattgatctttataattgaaggcaggttctgcagctgatcaactggcgttttctccaccgtggacctcaggacatg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10517230 ttttacacatcttctccatcttggaattgatctttataattgaaggaagcttctgcagctgatcaactggcgttttctccaccgtggacctcaggacatg 10517131  T
Q  108 gtagcttattaaatctagcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10517130 gtagcttattaaatctagcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctct 10517031  T
Q  208 gcatcaaccagcacagcttgaagagcaaacagtgttgttttcaattctgccagttgtgagtaattgaactttgtgtctttta 289  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |||||    
T  10517030 gcatcaaccagcacagcttgaagagcaaacagtgttgttttcaactcagccagttgtgaataattgaactttgtgtttttta 10516949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 11782306 - 11782590
Alignment:
Q  8 ttttacacatcttctccatcttggaattgatctttataattgaaggcaggttctgcagctgatcaactggcgttttctccaccgtggacctcaggacatg 107  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  11782306 ttttacacatcttctccatcttggaattgatctttatagttgaaggcaggttctgcagctgatcaactggtgttttctccaccgtggacttcaggacatg 11782405  T
Q  108 gtagcttattaaatctagcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctct 207  Q
    |||||||||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11782406 gtagcttattaagtcaagcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatctttgaactgtttctgctct 11782505  T
Q  208 gcatcaaccagcacagcttgaagagcaaacagtgttgttttcaattctgccagttgtgagtaattgaactttgtgtcttttacga 292  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||    
T  11782506 gcatcaaccagcacagcttgaagagcaaacagtgttgttttcaactctgccagttgtgagtaattgagctttgtgttttttacga 11782590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 10527093 - 10526833
Alignment:
Q  19 ttctccatcttggaattgatctttataattgaag---gcaggttctgcagctgatcaactggcgttttctccaccgtggacctcaggacatggtagctta 115  Q
    |||||||||||||||||||||||||||  ||| |   ||| || ||||| ||||| ||||||| | || |||||| || ||| |||  ||| |||||| |    
T  10527093 ttctccatcttggaattgatctttatagatgacgaatgcaagtcctgcaactgattaactggcatgttttccaccttgcaccgcagagcatcgtagctga 10526994  T
Q  116 ttaaatctagcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaac 215  Q
    |||| || ||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  10526993 ttaagtcaagcaaatcttcagcatcaaatattgcatctttcaagtcatgaagccattgtttgacaggaaggtcagtgaactgtttctgctctgcatcaac 10526894  T
Q  216 cagcacagcttgaagagcaaacagtgttgttttcaattctgccagttgtgagtaattgaac 276  Q
    ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||    
T  10526893 cagcacagcttgaagagcaaacaatgttgttttcaattctgccagcggtgagtaattgaac 10526833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 10500322 - 10500038
Alignment:
Q  8 ttttacacatcttctccatcttggaattgatctttata-at--tgaaggcaggttctgcagctgatcaactggcgttttctccaccgtggacctcaggac 104  Q
    ||||||||||||||||||||||| ||||||||||| |  ||  |||||||| ||| |||| |||| || |||| || ||||||| | ||  || || |      
T  10500322 ttttacacatcttctccatcttgtaattgatctttgttgatgatgaaggcaagttttgcaactgaccagctggtgtgttctccagcttgcgccgcaagga 10500223  T
Q  105 atggtagcttattaaatctagcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgc 204  Q
    |   ||||||||||| || ||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  10500222 agcatagcttattaagtcgagcaaatcttcagcatcaaagattgtgtctttcaagtcatcaagccattgtttgacaggaagatcagtgaattgtttctgc 10500123  T
Q  205 tctgcatcaaccagcacagcttgaagagcaaacagtgttgttttcaattctgccagttgtgagtaattgaactttgtgtctttta 289  Q
    ||||||||||| || ||||||||||||||||| |||||||||||||| ||||||| | | ||||||||||||||||||| |||||    
T  10500122 tctgcatcaactagaacagcttgaagagcaaaaagtgttgttttcaaatctgccaatagcgagtaattgaactttgtgtttttta 10500038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 124 - 276
Target Start/End: Complemental strand, 10541600 - 10541448
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 223  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  10541600 agcaaatcttcagcatcaaagattgcatctttcaagtcatcaagccattgcttgacaggaaggtcaatgaactgtttctgctctgcatcaaccagcacag 10541501  T
Q  224 cttgaagagcaaacagtgttgttttcaattctgccagttgtgagtaattgaac 276  Q
     |||||||||||||| ||||||||||||||| |||||  ||||||||||||||    
T  10541500 attgaagagcaaacaatgttgttttcaattcggccagcagtgagtaattgaac 10541448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 8860912 - 8860805
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 223  Q
    |||||||| |||| ||||||||  |||||||||||||||||||||||||||||||||| | |||  |||| ||| |||| |||||||||| |||||||||    
T  8860912 agcaaatcctcagcatcaaagagagcatctttcaagtcatcaagccattgtttgacagcacgattgttgatctgcttctcctctgcatcatccagcacag 8860813  T
Q  224 cttgaaga 231  Q
    ||||||||    
T  8860812 cttgaaga 8860805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 124 - 248
Target Start/End: Complemental strand, 10580227 - 10580103
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 223  Q
    ||||| || |||| ||||| ||| |||||||||||||||||||||||| ||||||||| | ||| ||||| ||| |||| |||||||||| ||||||||     
T  10580227 agcaagtcctcagcatcaatgatagcatctttcaagtcatcaagccatagtttgacagcaggattattgatctgcttctcctctgcatcatccagcacaa 10580128  T
Q  224 cttgaagagcaaacagtgttgtttt 248  Q
    |||||||||  | ||||||||||||    
T  10580127 cttgaagagtgagcagtgttgtttt 10580103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 11149297 - 11149420
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 223  Q
    |||||||| || | ||||||||| |||||||||||||||||||||||||||||||||| | |||  |||| ||| ||||  || |||||| |||||||||    
T  11149297 agcaaatcctcggcatcaaagatagcatctttcaagtcatcaagccattgtttgacagcaggattgttgatctgcttctcatcagcatcatccagcacag 11149396  T
Q  224 cttgaagagcaaacagtgttgttt 247  Q
    |||||||| | | |||||||||||    
T  11149397 cttgaagaaccagcagtgttgttt 11149420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 10376288 - 10376412
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 223  Q
    ||||| || |||| ||||||||| |||||||||||||||||||||||||| ||||||| | |||   ||| ||| |||| |||||||||| ||||||||     
T  10376288 agcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatccagcacaa 10376387  T
Q  224 cttgaagagcaaacagtgttgtttt 248  Q
    |||||||||  | ||||||||||||    
T  10376388 cttgaagagtgagcagtgttgtttt 10376412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 250
Target Start/End: Complemental strand, 10088416 - 10088290
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 223  Q
    ||||| || |||| ||||||||  |||||||||||||||||||||||| ||||||||| | |||  |||| ||| |||| ||| |||||| ||||||||     
T  10088416 agcaagtcctcagcatcaaagacagcatctttcaagtcatcaagccatagtttgacagcaggattgttgatctgcttctcctccgcatcatccagcacaa 10088317  T
Q  224 cttgaagagcaaacagtgttgttttca 250  Q
    |||||||||  | ||||||||||||||    
T  10088316 cttgaagagtgagcagtgttgttttca 10088290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 250
Target Start/End: Complemental strand, 10195290 - 10195173
Alignment:
Q  133 tcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacagcttgaagag 232  Q
    |||| ||||||||  |||||||||||||||||||||||| ||||||||| | |||  |||| ||| |||| ||| |||||| |||||||| |||||||||    
T  10195290 tcagcatcaaagacagcatctttcaagtcatcaagccatagtttgacagcaggattgttgatctgcttctcctccgcatcatccagcacaacttgaagag 10195191  T
Q  233 caaacagtgttgttttca 250  Q
      | ||||||||||||||    
T  10195190 tgagcagtgttgttttca 10195173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 138 - 250
Target Start/End: Original strand, 10434501 - 10434613
Alignment:
Q  138 atcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacagcttgaagagcaaac 237  Q
    ||||||||  |||||||||||||||||||||||||||||||||| | | |  |||| ||| |||| |||||||||| |||||||| |||||||||  |      
T  10434501 atcaaagacagcatctttcaagtcatcaagccattgtttgacagcaggtttgttgatctgcttctcctctgcatcatccagcacaacttgaagagtgaga 10434600  T
Q  238 agtgttgttttca 250  Q
    |||||||||||||    
T  10434601 agtgttgttttca 10434613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 10888932 - 10888825
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 223  Q
    |||||||| || | ||||||||  |||||||||||||||||||||||||||||||||| | | |  |||| ||| |||| ||| |||||| |||||||||    
T  10888932 agcaaatcctccgcatcaaagacagcatctttcaagtcatcaagccattgtttgacagcacggttgttgatctgcttctcctcagcatcatccagcacag 10888833  T
Q  224 cttgaaga 231  Q
    ||||||||    
T  10888832 cttgaaga 10888825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 11131469 - 11131592
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 223  Q
    |||||||| || | ||||||||| ||||||||||||||||||| ||||| |||||||| | | |  |||| ||| |||| ||| |||||| |||||||||    
T  11131469 agcaaatcctccgcatcaaagatagcatctttcaagtcatcaacccattttttgacagcacggttgttgatctgcttctcctcagcatcatccagcacag 11131568  T
Q  224 cttgaagagcaaacagtgttgttt 247  Q
    |||||||| | | |||||||||||    
T  11131569 cttgaagaaccagcagtgttgttt 11131592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 10364241 - 10364364
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 223  Q
    |||||||| || | ||||||||  |||||||||||| ||||||||||||||||||||| | |||  |||| ||| ||||  ||||| ||| ||||||||     
T  10364241 agcaaatcctcggcatcaaagacagcatctttcaagccatcaagccattgtttgacagcaggattgttgatctgcttctcttctgcgtcatccagcacaa 10364340  T
Q  224 cttgaagagcaaacagtgttgttt 247  Q
    |||||||||  | |||||||||||    
T  10364341 cttgaagagtgagcagtgttgttt 10364364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 11160460 - 11160563
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 223  Q
    |||||||| || | ||||||||  |||||||||||||||||||||||||||||||||| | | |  |||| ||  |||| |||||||||| |||||||||    
T  11160460 agcaaatcctcggcatcaaagacagcatctttcaagtcatcaagccattgtttgacagcacggttgttgatctacttctcctctgcatcatccagcacag 11160559  T
Q  224 cttg 227  Q
    ||||    
T  11160560 cttg 11160563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 11768857 - 11768754
Alignment:
Q  127 aaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacagctt 226  Q
    ||||| |||| ||||||||| || ||||||||||||||||||||||||||||||| |||||  || | ||| |||| ||| |||||| |||| ||||| |    
T  11768857 aaatcctcagcatcaaagatagcgtctttcaagtcatcaagccattgtttgacagcaagattgttcatctgcttctcctccgcatcatccagtacagcct 11768758  T
Q  227 gaag 230  Q
    ||||    
T  11768757 gaag 11768754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 10085734 - 10085678
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgaca 180  Q
    ||||||||||||| ||||||||   |||||||||||| ||||||||| |||||||||    
T  10085734 agcaaatcttcagcatcaaagaaaacatctttcaagttatcaagccactgtttgaca 10085678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 10192654 - 10192598
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgaca 180  Q
    ||||||||||||| ||||||||   |||||||||||| ||||||||| |||||||||    
T  10192654 agcaaatcttcagcatcaaagaaaacatctttcaagttatcaagccactgtttgaca 10192598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 259
Target Start/End: Complemental strand, 13332530 - 13332395
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 223  Q
    |||||||| |||| |||| |||||||||||||||  | ||| | |||||||||||||| |   |   |||  || ||||| ||||||||| ||||||| |    
T  13332530 agcaaatcctcagcatcatagattgcatctttcagctgatccaaccattgtttgacagcagtgttggtgatttgcttctgttctgcatcatccagcaccg 13332431  T
Q  224 cttgaagagcaaacagtgttgttttcaattctgcca 259  Q
    | |||||||| | ||||||||||| ||| |||||||    
T  13332430 cctgaagagcgagcagtgttgtttccaactctgcca 13332395  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 9838487 - 9838431
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgaca 180  Q
    |||||||| |||| ||||||||   |||||||||||| ||||||||| |||||||||    
T  9838487 agcaaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgaca 9838431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 9849365 - 9849309
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgaca 180  Q
    |||||||| |||| ||||||||   |||||||||||| ||||||||| |||||||||    
T  9849365 agcaaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgaca 9849309  T

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Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 3 - 278
Target Start/End: Original strand, 17853242 - 17853517
Alignment:
Q  3 caacattttacacatcttctccatcttggaattgatctttataattgaaggcaggttctgcagctgatcaactggcgttttctccaccgtggacctcagg 102  Q
    |||| ||||||||||||||||||||||  ||||||||||||||  |||||| |  |||||||||||||||||||| |||||||||||| || |||||| |    
T  17853242 caaccttttacacatcttctccatcttcaaattgatctttatagatgaaggtaaattctgcagctgatcaactggtgttttctccaccttgcacctcaag 17853341  T
Q  103 acatggtagcttattaaatctagcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttct 202  Q
     ||| |||| | |||||||| |||| |||||| |  |||||||| || |||||||| ||||||||||||||||||||||||||||| ||||| |||||||    
T  17853342 gcatcgtagttgattaaatcgagcagatcttccgtgtcaaagatagcgtctttcaaatcatcaagccattgtttgacaggaagatcgttgaattgtttct 17853441  T
Q  203 gctctgcatcaaccagcacagcttgaagagcaaacagtgttgttttcaattctgccagttgtgagtaattgaactt 278  Q
    | |||||||||||||||||||||||||||| ||||||||| |||||||| |||  |||||||||||||||||||||    
T  17853442 gttctgcatcaaccagcacagcttgaagagaaaacagtgtcgttttcaactctttcagttgtgagtaattgaactt 17853517  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 248
Target Start/End: Complemental strand, 26906509 - 26906399
Alignment:
Q  138 atcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacagcttgaagagcaaac 237  Q
    ||||||||| |||||||||||||||||||||||||||||||||| | |||  |||| |||||||| |||||||||| |||||||| | || ||||  | |    
T  26906509 atcaaagatagcatctttcaagtcatcaagccattgtttgacagcaggattgttgatctgtttctcctctgcatcatccagcacaacctgcagagtgagc 26906410  T
Q  238 agtgttgtttt 248  Q
    |||||||||||    
T  26906409 agtgttgtttt 26906399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 31680182 - 31680290
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 223  Q
    |||||||| |||| |||| | |||||||||||||| ||||||||||||||||||||||||||||  |||| ||| |||| ||| |||||| | || ||||    
T  31680182 agcaaatcctcagcatcatatattgcatctttcaactcatcaagccattgtttgacaggaagattgttgatctgcttcttctcagcatcatcaagaacag 31680281  T
Q  224 cttgaagag 232  Q
    | |||||||    
T  31680282 catgaagag 31680290  T

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Target: scaffold0083 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 124 - 250
Target Start/End: Original strand, 50248 - 50374
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 223  Q
    ||||| || |||| ||||||||  |||||||||||||||||||||||| ||||||||| | |||  |||| ||| |||| ||| |||||| ||||||||     
T  50248 agcaagtcctcagcatcaaagacagcatctttcaagtcatcaagccatagtttgacagcaggattgttgatctgcttctcctcagcatcatccagcacaa 50347  T
Q  224 cttgaagagcaaacagtgttgttttca 250  Q
    |||||||||  |  |||||||||||||    
T  50348 cttgaagagtgagaagtgttgttttca 50374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 11484643 - 11484589
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttga 178  Q
    |||||||| |||| |||||||||||||||||||||   |||||||||||||||||    
T  11484643 agcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 11484589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 44958152 - 44958209
Alignment:
Q  124 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacag 181  Q
    |||||||| || | |||||| |||| || |||||||||||||||||||||||||||||    
T  44958152 agcaaatcctcggcatcaaatattgtatttttcaagtcatcaagccattgtttgacag 44958209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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